{"id":"W2609215433","doi":"10.3389/fmicb.2017.00745","title":"Identification of Cleavage Sites Recognized by the 3C-Like Cysteine Protease within the Two Polyproteins of Strawberry Mottle Virus","year":2017,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":19,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Agriculture and Agri-Food Canada","keywords":"Polyproteins; Helicase; Cleavage (geology); Biology; Cleavage factor; Protease; Nepovirus; RNA; NS3; Movement protein; Cleavage and polyadenylation specificity factor; Cysteine protease; RNA Helicase A; N-terminus; NS2-3 protease; Virology; Peptide sequence; Virus; Plant virus; Genetics; Biochemistry; Gene; Enzyme; Polyadenylation","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009470913,0.0001248895,0.0002801155,0.00001888232,0.0003768257,0.00003401249,0.0009386812,0.00008708778,0.00001723802],"category_scores_gemma":[0.0004202469,0.00003906888,0.00007277327,0.0001153082,0.0009271716,0.0000805448,0.0002149441,0.0002000434,0.000007244499],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002112725,"about_ca_system_score_gemma":0.00001414287,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001850526,"about_ca_topic_score_gemma":0.002265459,"domain_scores_codex":[0.9986902,0.0003351665,0.0003950746,0.0002465334,0.00008613087,0.0002469228],"domain_scores_gemma":[0.9990257,0.0001522754,0.0005066367,0.0002207136,0.00006844616,0.00002620514],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001450001,0.00006348269,0.005279137,0.00001016666,0.00004195402,0.000001131134,0.0001352979,0.000001185236,0.9766313,0.00001215433,0.01349875,0.00418041],"study_design_scores_gemma":[0.000486092,0.0002303958,0.01742946,0.00003334114,0.00001920885,0.00000714423,0.0007438274,0.0000763781,0.976261,0.0005895175,0.003983325,0.0001402772],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9947398,0.001154449,0.00002024094,0.001367733,0.0002328052,0.0007668431,0.001604225,0.000009699545,0.0001042512],"genre_scores_gemma":[0.9989703,0.0001494764,0.0001367131,0.00005411829,0.0000433223,0.00005516216,0.0001071403,0.000001246606,0.0004825575],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01215032,"threshold_uncertainty_score":0.3416202,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02105914953947406,"score_gpt":0.2591866380593034,"score_spread":0.2381274885198294,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}