{"id":"W2609324361","doi":"10.1038/nmicrobiol.2017.64","title":"Variability and host density independence in inductions-based estimates of environmental lysogeny","year":2017,"lang":"en","type":"article","venue":"Nature Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":98,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Office of International Science and Engineering; Gordon and Betty Moore Foundation; National Science Foundation","keywords":"Lysogenic cycle; Lysogen; Lytic cycle; Biology; Host (biology); Bacteriophage; Virology; Genetics; Ecology; Virus; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003401807,0.0002769497,0.000337343,0.001355473,0.0003427856,0.0009663735,0.0005234358,0.00039032,0.0005516933],"category_scores_gemma":[0.009931973,0.0002440285,0.0003589085,0.001088666,0.0007943654,0.001066809,0.001148696,0.0005007935,0.0002707452],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004337096,"about_ca_system_score_gemma":0.0001850681,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002275659,"about_ca_topic_score_gemma":0.00252038,"domain_scores_codex":[0.9975979,0.000969193,0.0001453887,0.0007003885,0.0004638231,0.0001233236],"domain_scores_gemma":[0.9908144,0.005469576,0.00141467,0.001393283,0.0007459867,0.0001621476],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002340653,0.00005018637,0.935854,0.0001885901,0.0003320097,0.00008015293,0.0009972078,0.007800817,0.03427073,0.001314113,0.0004010034,0.01847709],"study_design_scores_gemma":[0.000006673441,0.0001165424,0.9554968,0.00005237991,0.0001287596,0.0002392441,0.000847893,0.0234575,0.0146032,0.002476374,0.002528108,0.00004658824],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9748479,0.0008127975,0.01987,0.00007136363,0.00001599957,0.00002630454,0.001381705,0.0001046585,0.002869256],"genre_scores_gemma":[0.9967206,0.0001293824,0.00207117,0.00001410773,0.000006803297,0.00002218656,0.0008892148,0.00001887499,0.0001277627],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003401807,"threshold_uncertainty_score":0.01799065,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004818643310222218,"score_gpt":0.2381004236830161,"score_spread":0.2332817803727938,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}