{"id":"W2609592944","doi":"10.1101/120873","title":"Multi-omics biomarker pipeline reveals elevated levels of protein-glutamine gamma-glutamyltransferase 4 in seminal plasma of prostate cancer patients","year":2017,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Lunenfeld-Tanenbaum Research Institute; Rockyview General Hospital; University of Toronto; University Health Network; Mount Sinai Hospital","funders":"Prostate Cancer Canada","keywords":"Prostate cancer; Biomarker; PCA3; Prostate; Prostate biopsy; Biomarker discovery; Biopsy","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008491141,0.0006221256,0.0006835203,0.0010744,0.000309543,0.001016335,0.0002606343,0.000396192,0.0006832324],"category_scores_gemma":[0.0008185164,0.0002029564,0.0007442542,0.0008424906,0.0001816843,0.0002420708,0.0005208828,0.000401894,0.000275475],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004092162,"about_ca_system_score_gemma":0.0006448471,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001152543,"about_ca_topic_score_gemma":0.0010122,"domain_scores_codex":[0.9996163,0.00007448648,0.00003534124,0.0001239118,0.0001044777,0.00004539116],"domain_scores_gemma":[0.9997479,0.00006746991,0.00006889414,0.00002260575,0.00006580366,0.00002731376],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.002837793,0.0003150651,0.3886634,0.0004611676,0.000596697,0.0005270538,0.0002327265,0.005871801,0.5519915,0.0003321564,0.001446031,0.04672464],"study_design_scores_gemma":[0.00012219,0.001587535,0.5589342,0.00006783217,0.0007315808,0.001369182,0.0006053864,0.07495385,0.3553504,0.001114275,0.005090148,0.00007338368],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.984753,0.001339358,0.009368775,0.000249552,0.00003329741,0.000079811,0.003450572,0.0003207054,0.0004049571],"genre_scores_gemma":[0.9807478,0.0003593079,0.01414636,0.0001466061,0.00001755867,0.00007609446,0.00399935,0.00002254023,0.0004843588],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001152543,"threshold_uncertainty_score":0.004490614,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02121202279532211,"score_gpt":0.2683507881987352,"score_spread":0.2471387654034131,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}