{"id":"W2611036498","doi":"10.1093/bioinformatics/btx281","title":"Assembling draft genomes using contiBAIT","year":2017,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":13,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia; BC Cancer Agency","funders":"Canadian Institutes of Health Research; Terry Fox Foundation; Terry Fox Research Institute; Michael Smith Health Research BC; Canadian Cancer Society; National Institutes of Health","keywords":"Bioconductor; Computer science; Sequence assembly; Orientation (vector space); Massively parallel; Data mining; Computational biology; Biology; Parallel computing; Genetics; Mathematics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.007939094,0.006694789,0.003635596,0.007854418,0.002597335,0.00570244,0.005939565,0.001713077,0.1008496],"category_scores_gemma":[0.0230768,0.004062384,0.004939061,0.006981443,0.001078428,0.002859586,0.00424243,0.004320866,0.09424372],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001807344,"about_ca_system_score_gemma":0.003578104,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004430857,"about_ca_topic_score_gemma":0.006614738,"domain_scores_codex":[0.9971678,0.0006411792,0.0003664991,0.001066941,0.0005192583,0.0002383846],"domain_scores_gemma":[0.9933301,0.002855671,0.0007871488,0.001325465,0.001298378,0.0004032199],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00295995,0.0001935654,0.003991063,0.009554612,0.001876293,0.001147127,0.001702376,0.008810724,0.03119303,0.01090739,0.7866485,0.1410154],"study_design_scores_gemma":[0.0009306683,0.0004730564,0.005732216,0.001575908,0.001365679,0.001277621,0.0003076432,0.0497212,0.04556561,0.02262909,0.8698397,0.0005815315],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.004637981,0.001125449,0.303051,0.0005122988,0.0008968897,0.0007322751,0.1908606,0.4884851,0.009698395],"genre_scores_gemma":[0.0117857,0.0009315532,0.3882984,0.0003395191,0.0001745989,0.001867435,0.4570083,0.1344755,0.005119042],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.1008496,"threshold_uncertainty_score":0.3373754,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03405659169511104,"score_gpt":0.2855712378516305,"score_spread":0.2515146461565194,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}