{"id":"W2612128553","doi":"10.1534/g3.117.040691","title":"Insight into the Recent Genome Duplication of the Halophilic Yeast <i>Hortaea werneckii</i>: Combining an Improved Genome with Gene Expression and Chromatin Structure","year":2017,"lang":"en","type":"article","venue":"G3 Genes Genomes Genetics","topic":"Mycorrhizal Fungi and Plant Interactions","field":"Agricultural and Biological Sciences","cited_by":48,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Division of Biological Infrastructure; University of California, Riverside; National Institute of Food and Agriculture; National Institutes of Health; Univerza v Ljubljani; U.S. Department of Agriculture","keywords":"Genome; Biology; Gene duplication; Extremophile; Comparative genomics; Gene; Genetics; Genomics; Computational biology; Gene prediction; Genome evolution; Thermophile","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001838819,0.0002770038,0.0003381825,0.0003524474,0.0001778096,0.000383454,0.0002771013,0.0003160621,0.0007171651],"category_scores_gemma":[0.0002428077,0.0001906819,0.0002479285,0.0004599035,0.0001530748,0.0003640151,0.0003807797,0.0003596951,0.0002689912],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002847698,"about_ca_system_score_gemma":0.0001972937,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001314986,"about_ca_topic_score_gemma":0.001997421,"domain_scores_codex":[0.9999207,0.000008254522,0.000007215202,0.00003048742,0.00002111325,0.00001209709],"domain_scores_gemma":[0.9998565,0.00003649029,0.0000393032,0.00002324209,0.00002182528,0.00002267474],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005281128,0.000004797068,0.00228851,0.00007440194,0.00001165664,0.00009269411,0.00003775537,0.0001698981,0.9944553,0.00007794944,0.00004451454,0.002689851],"study_design_scores_gemma":[0.00002411494,0.000286986,0.2738053,0.00007292376,0.0001593585,0.001556176,0.0006022611,0.005637156,0.6989701,0.0007179211,0.01811398,0.00005378609],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9860178,0.001296144,0.008345548,0.000172103,0.0000241493,0.0000214724,0.002951121,0.0002651499,0.000906657],"genre_scores_gemma":[0.9761514,0.001116293,0.01644486,0.0001062793,0.00001697632,0.00002777741,0.005230804,0.0001229131,0.0007826827],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001314986,"threshold_uncertainty_score":0.002614677,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01170212638367991,"score_gpt":0.2092019951095614,"score_spread":0.1974998687258815,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}