{"id":"W2612476015","doi":"10.1016/j.bpj.2017.04.003","title":"Environmental Calcium Controls Alternate Physical States of the Caulobacter Surface Layer","year":2017,"lang":"en","type":"article","venue":"Biophysical Journal","topic":"Bacterial biofilms and quorum sensing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":24,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of British Columbia","funders":"National Science Foundation Graduate Research Fellowship Program; SLAC National Accelerator Laboratory; Natural Sciences and Engineering Research Council of Canada; Basic Energy Sciences; National Institute of General Medical Sciences; Biological and Environmental Research; Office of Science; Chemistry, Engineering and Medicine for Human Health, Stanford University; Laboratory Directed Research and Development; U.S. Department of Energy; National Institutes of Health; National Science Foundation","keywords":"Caulobacter crescentus; Calcium; Biophysics; S-layer; Cell biology; Chemistry; Biochemistry; Biology; Bacterial protein; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007419412,0.0001424009,0.0001838218,0.000005470629,0.0003081978,0.0001058674,0.0003643343,0.00006878827,0.00001269442],"category_scores_gemma":[0.00002157306,0.00008910145,0.0002430273,0.000009630136,0.0002758715,0.00001118554,0.0002173006,0.0001646273,0.00001107601],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000124693,"about_ca_system_score_gemma":0.00002441246,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001867796,"about_ca_topic_score_gemma":0.000002142962,"domain_scores_codex":[0.9991974,0.00005930571,0.0001687284,0.0001707206,0.0001697354,0.0002341145],"domain_scores_gemma":[0.9991818,0.00000938466,0.0002742627,0.0004122551,0.0000263584,0.00009595012],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001051797,0.0001066869,0.002889603,0.000002303413,0.00006401881,0.000004421532,0.00002274487,0.00001592883,0.9959649,0.00001972092,0.0002587999,0.0005456404],"study_design_scores_gemma":[0.0005904707,0.0001414962,0.04918073,0.00001394432,0.00002815299,0.00004019535,0.00001449887,0.000122739,0.9463845,0.00002993093,0.003331545,0.0001217912],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9986897,0.00001830997,0.00002051211,0.0005147263,0.0004925093,0.00006900993,0.0000657245,0.000002127473,0.0001273993],"genre_scores_gemma":[0.9984551,0.00003317627,0.00005228057,0.0001290829,0.001117799,3.888849e-7,0.000006967505,0.00001524278,0.0001899499],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.04958045,"threshold_uncertainty_score":0.3633452,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01216439108082507,"score_gpt":0.2531643751453353,"score_spread":0.2409999840645102,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}