{"id":"W2612787697","doi":"10.1128/genomea.00110-17","title":"AnCo3, a New Member of the Emerging Family of Phage-Like Plasmids","year":2017,"lang":"en","type":"article","venue":"Genome Announcements","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; McGill University","funders":"Cystic Fibrosis Canada; Genome Canada; McGill University; Université Laval","keywords":"Plasmid; Biology; Family member; Genetics; Computational biology; Genealogy; DNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.00008409798,0.00009557657,0.0001273237,0.00001445785,0.0002485799,0.00002777508,0.000536887,0.00003111101,0.00212711],"category_scores_gemma":[0.00001076786,0.00007287952,0.00008460551,0.00006295157,0.0001639935,0.0002556429,0.0004467442,0.00007013707,0.0001498802],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000566499,"about_ca_system_score_gemma":0.00001876768,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001850457,"about_ca_topic_score_gemma":0.0001589425,"domain_scores_codex":[0.9992419,0.00001395539,0.0002199104,0.0001663403,0.0001777774,0.0001801192],"domain_scores_gemma":[0.9991049,0.000005278782,0.0002858612,0.000545949,0.00001242828,0.00004562907],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001250918,0.0000558917,0.008793865,0.000006476223,0.00002807128,7.602003e-7,0.0004512151,0.0000749345,0.9842775,0.000006494878,0.00401461,0.002277694],"study_design_scores_gemma":[0.0005779825,0.00006355647,0.6204267,0.00003857618,0.00003581758,0.000003345927,0.0001527017,0.00003697417,0.01855428,0.0000816753,0.3598824,0.0001459386],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9687369,0.00003574566,0.0000864092,0.0001525553,0.0006387274,0.0001548891,0.00007107379,0.000005301657,0.03011838],"genre_scores_gemma":[0.9866989,0.00003603947,0.0003108289,0.0001742074,0.00003840963,0.000003522906,0.000005985301,0.000008318901,0.01272384],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9657232,"threshold_uncertainty_score":0.9987851,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02617478905002947,"score_gpt":0.268976888816687,"score_spread":0.2428020997666575,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}