{"id":"W2612817584","doi":"10.1371/journal.pone.0177735","title":"The malleable gut microbiome of juvenile rainbow trout (Oncorhynchus mykiss): Diet-dependent shifts of bacterial community structures","year":2017,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":170,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"Skretting Aquaculture Research Centre; Natural Sciences and Engineering Research Council of Canada; GEOMAR Helmholtz-Zentrum für Ozeanforschung Kiel; Dalhousie University","keywords":"Biology; Firmicutes; Rainbow trout; Microbiome; Juvenile; Bacteroidetes; Juvenile fish; Fusobacteria; Proteobacteria; Trout; Fish physiology; Plant protein; Zoology; Ecology; Food science; Fish <Actinopterygii>; Bacteria; Fishery; 16S ribosomal RNA; Bioinformatics; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004451482,0.000247023,0.0005728132,0.0000619675,0.00114312,0.00006650147,0.001358564,0.000226585,0.0007507751],"category_scores_gemma":[0.0001862228,0.0001783167,0.0001755749,0.00004378388,0.0008003624,0.0001248937,0.0006762032,0.0003948681,0.00008414348],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000330837,"about_ca_system_score_gemma":0.00005591657,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004711722,"about_ca_topic_score_gemma":0.0003711256,"domain_scores_codex":[0.9984818,0.0003334179,0.0004952519,0.0002201657,0.00007296214,0.0003963967],"domain_scores_gemma":[0.9976966,0.0001317272,0.0006793628,0.001316927,0.0001446037,0.00003080921],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00113641,0.0009406708,0.0006120552,0.0001712354,0.001321403,0.000001878922,0.0007861611,3.207927e-7,0.9893289,0.0006243759,0.004594617,0.0004820351],"study_design_scores_gemma":[0.003367902,0.0005059165,0.02563405,0.0001792188,0.0006296475,0.000002748535,0.0008929294,6.346411e-7,0.9593589,0.0006570499,0.008456058,0.0003149919],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9938442,0.001175178,0.000003880621,0.0002993986,0.0002442329,0.0005111209,0.0004283625,0.00003525263,0.003458424],"genre_scores_gemma":[0.9920905,0.000134665,0.0001091439,0.00004111542,0.00005651047,0.00001701357,0.000342935,0.00002263516,0.007185502],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02996998,"threshold_uncertainty_score":0.8792071,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03460160941092629,"score_gpt":0.238317753574156,"score_spread":0.2037161441632297,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}