{"id":"W2612900130","doi":"10.1101/135491","title":"African nonhuman primates are infected with the yaws bacterium <i>Treponema pallidum</i> subsp. <i>pertenue</i>","year":2017,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"Canadian Institutes of Health Research; Max-Planck-Institut für Evolutionäre Anthropologie; Grantová Agentura České Republiky; Max-Planck-Gesellschaft; Deutsche Forschungsgemeinschaft; Natural Sciences and Engineering Research Council of Canada; Fondation Méditerranée Infection; Agence Nationale de la Recherche; Deutscher Akademischer Austauschdienst; National Science Foundation","keywords":"Treponema; Biology; Subspecies; African Green Monkey; Simian; Virology; Genome; Syphilis; Strain (injury); Bacteria; Microbiology; Gene; Genetics; Virus; Zoology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00008518275,0.0001717239,0.0001046014,0.0001847816,0.0003389058,0.0002089921,0.00008828397,0.0002157786,0.002328587],"category_scores_gemma":[0.0001238365,0.00009439094,0.0001324012,0.0001591644,0.0002422529,0.0001253605,0.0002397351,0.0002430583,0.0003574724],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008358383,"about_ca_system_score_gemma":0.00006274932,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001390323,"about_ca_topic_score_gemma":0.001408039,"domain_scores_codex":[0.9999331,0.00001090873,0.000002361226,0.00002525908,0.00001107646,0.00001729098],"domain_scores_gemma":[0.9999552,0.000008389105,0.00001758362,0.000005500985,0.000004036192,0.000009286707],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007332368,0.0001930025,0.119368,0.0001681809,0.00008912069,0.002010584,0.001646114,0.0001770397,0.8561203,0.0003000172,0.0008782477,0.0183161],"study_design_scores_gemma":[0.00003826374,0.00120989,0.9003974,0.00007581453,0.0000789344,0.007365801,0.00280695,0.001121819,0.07197268,0.0006481729,0.01426136,0.00002294641],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980456,0.0002331634,0.0001829588,0.0000538666,0.000005642789,0.000009653292,0.0002949469,0.0000142407,0.001159976],"genre_scores_gemma":[0.9973782,0.0003899861,0.0006398563,0.0001316658,0.000009972539,0.00001970821,0.0007534196,0.000006660474,0.0006706081],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002328587,"threshold_uncertainty_score":0.00778985,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0182820213571127,"score_gpt":0.2295256194529429,"score_spread":0.2112435980958302,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}