{"id":"W2614236185","doi":"10.4103/2212-5531.201892","title":"Performance of the Xpert MTB/RIF Assay in the Diagnosis of Tuberculosis in Formalin-fixed, Paraffin-embedded Tissues","year":2017,"lang":"en","type":"article","venue":"International Journal of Mycobacteriology","topic":"Diagnosis and treatment of tuberculosis","field":"Medicine","cited_by":36,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Infection and Immunity","funders":"National Institute for Health and Care Research","keywords":"Medicine; GeneXpert MTB/RIF; Tuberculosis; Gold standard (test); Histology; Mycobacterium tuberculosis; Rifampicin; Extrapulmonary tuberculosis; Pathology; Staining; Ziehl–Neelsen stain; Internal medicine; Virology; Sputum; Acid-fast","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008894293,0.0001489826,0.0005175536,0.0002214694,0.00004776195,0.00002690558,0.0009581121,0.0001146963,0.0001197204],"category_scores_gemma":[0.0006732363,0.00008076025,0.0002701931,0.00007300297,0.000205431,0.0002661005,0.0001324448,0.0002748185,0.00000421344],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009394922,"about_ca_system_score_gemma":0.00008650531,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002643826,"about_ca_topic_score_gemma":0.0001879865,"domain_scores_codex":[0.9981971,0.0001715561,0.0008576145,0.0001256811,0.0004692195,0.0001788629],"domain_scores_gemma":[0.9978541,0.0004424235,0.0009664967,0.0003771453,0.0003220401,0.00003781979],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004228368,0.0007066786,0.9866863,0.00002825121,0.0003126128,0.00006564998,0.0007100782,0.00003135635,0.001654481,0.0002667961,0.0003405101,0.008774403],"study_design_scores_gemma":[0.001965278,0.0005707914,0.9784687,0.0006506674,0.00009878787,0.0002728292,0.000127387,0.00008918824,0.01620457,0.00009621313,0.001387645,0.00006792136],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9834325,0.0003387508,0.000001213474,0.0143014,0.0008227744,0.0001796792,0.000018221,0.000001820082,0.00090367],"genre_scores_gemma":[0.9964157,0.0026388,0.0001943864,0.0004894191,0.0001939246,0.00002727034,0.000005630622,0.000009734725,0.00002515234],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01455009,"threshold_uncertainty_score":0.3293307,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02283719091790071,"score_gpt":0.3206057290659673,"score_spread":0.2977685381480666,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}