{"id":"W2615396352","doi":"","title":"Phylogenetic and Phenotypic Analysis of Isolates from Common and Rare Salmonella enterica Serovars","year":2017,"lang":"en","type":"article","venue":"IAFP 2017","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":false,"ca_institutions":"McGill University","funders":"","keywords":"Salmonella enterica; Serotype; Phylogenetic tree; Salmonella; Biology; Phylogenetics; Genetics; Virology; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001230285,0.0001275176,0.0004286498,0.00001678067,0.0002573364,0.00006420191,0.0002967345,0.0001029985,0.0001163873],"category_scores_gemma":[0.00005211008,0.00005384148,0.00008294283,0.00006237775,0.0002218469,0.00005977094,0.0001802275,0.00006099735,0.000005906408],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00000380552,"about_ca_system_score_gemma":0.000001792239,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002597077,"about_ca_topic_score_gemma":0.001342628,"domain_scores_codex":[0.9991832,0.00007922931,0.0001999831,0.0003034909,0.00005642734,0.0001776952],"domain_scores_gemma":[0.9992036,0.0002458395,0.0002508415,0.0001871954,0.00002604672,0.00008649548],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00003124994,0.00002027541,0.8519797,0.000002731692,0.0001777291,0.000002489878,0.00008068382,0.000001349348,0.1171198,0.00001558812,0.0001007328,0.03046769],"study_design_scores_gemma":[0.0001046224,0.00009219346,0.9966531,0.000009535515,0.0002316323,0.000002154502,0.00006699013,0.0003510426,0.0006482846,0.0008915237,0.0008352193,0.0001136751],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973428,0.001498947,0.000002437472,0.0004522761,0.00006381822,0.00006702197,0.0001224611,0.00001220891,0.0004380789],"genre_scores_gemma":[0.9990379,0.0005868447,0.00006208198,0.0001171591,0.00006879052,0.000003056111,0.00005268477,8.113656e-7,0.00007070936],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1446734,"threshold_uncertainty_score":0.3926021,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03227879535140038,"score_gpt":0.2624181582592576,"score_spread":0.2301393629078572,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}