{"id":"W2615673827","doi":"10.1139/gen-2016-0215","title":"Evaluating five different loci (<i>rbc</i>L, <i>rpo</i>B, <i>rpo</i>C1, <i>mat</i>K, and ITS) for DNA barcoding of Indian orchids","year":2017,"lang":"en","type":"article","venue":"Genome","topic":"Biological and pharmacological studies of plants","field":"Medicine","cited_by":35,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Shivaji University, Kolhapur","keywords":"Biology; DNA barcoding; Orchidaceae; rpoB; Endangered species; Locus (genetics); Botany; Evolutionary biology; Habitat; Ecology; Genetics; Gene","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005887979,0.0002710674,0.0006875027,0.00004123095,0.0006460136,0.00003883466,0.0003053782,0.000165131,0.0001666425],"category_scores_gemma":[0.0006262371,0.0001771273,0.0001627984,0.00004259553,0.000227488,0.00006744684,0.0003243776,0.0002568249,0.00001796774],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003651925,"about_ca_system_score_gemma":0.00002650226,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002589328,"about_ca_topic_score_gemma":0.00001049059,"domain_scores_codex":[0.9983225,0.00007310016,0.0004039094,0.0004495461,0.0002465473,0.0005044004],"domain_scores_gemma":[0.9986204,0.0003939634,0.0003071452,0.0002765344,0.0001298792,0.0002720584],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.002015815,0.0004951933,0.02053516,0.00138654,0.0005512288,0.00006989143,0.001085292,0.00001234174,0.9404531,0.0004710013,0.00075268,0.03217175],"study_design_scores_gemma":[0.01494773,0.007959335,0.8781564,0.0005135356,0.0009281297,0.0001046659,0.000507494,0.0009702023,0.065906,0.003978461,0.02474588,0.001282142],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9927594,0.002088391,0.00002597444,0.001583522,0.0001866541,0.0009953661,0.0002483079,0.0000403383,0.002072027],"genre_scores_gemma":[0.9961011,0.0008674703,0.0005290577,0.001222366,0.0004019845,0.00009241856,0.00005964992,0.0000170923,0.0007088892],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8745471,"threshold_uncertainty_score":0.7223039,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.118788271461093,"score_gpt":0.3720120228570575,"score_spread":0.2532237513959645,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}