{"id":"W2617306252","doi":"","title":"The putative type I secretion sequence of a 1.5-MDa icebinding adhesin folds as a Ca2+-dependent β-rich structure","year":2015,"lang":"en","type":"article","venue":"Undergraduate Research Journal","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Queen's University","funders":"","keywords":"Circular dichroism; Biology; Biochemistry; Signal peptide; Size-exclusion chromatography; Bacterial adhesin; Fusion protein; Edman degradation; Peptide sequence; Chemistry; Gene; Recombinant DNA; Escherichia coli; Enzyme","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001696967,0.0001243442,0.0001325006,0.000102225,0.0007147811,0.0002730386,0.0004245863,0.00007147739,0.000368895],"category_scores_gemma":[0.0005280843,0.00008346629,0.00005920888,0.000559789,0.0003870641,0.000438762,0.0001988206,0.0009289585,0.0002624507],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008456089,"about_ca_system_score_gemma":0.0002533114,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001148367,"about_ca_topic_score_gemma":0.0006976363,"domain_scores_codex":[0.997462,0.0005870932,0.0002966154,0.0002098354,0.0009362791,0.0005081825],"domain_scores_gemma":[0.998832,0.0002328304,0.0001842229,0.0001971901,0.0002585626,0.000295167],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002126306,0.00005589002,0.0008511907,0.000006240362,0.00006179867,0.00008453068,0.001575469,0.0005934449,0.9830169,0.0007839082,0.005891264,0.006866748],"study_design_scores_gemma":[0.004919954,0.005916621,0.0191947,0.0006025016,0.0001692616,0.01126307,0.03022576,0.004506433,0.4241508,0.3865642,0.110935,0.001551641],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9886795,0.000153991,0.0003213949,0.005680947,0.0004702134,0.0002504569,0.00001994301,0.00001294791,0.004410594],"genre_scores_gemma":[0.9960908,0.0003746211,0.0004029452,0.00003216427,0.00009449381,0.000003302544,0.000006140135,0.00001646866,0.002979054],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5588661,"threshold_uncertainty_score":0.549759,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08114798659777843,"score_gpt":0.3816008031828974,"score_spread":0.300452816585119,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}