{"id":"W2618854496","doi":"10.1002/cam4.1074","title":"Germline <scp>INDEL</scp>s and <scp>CNV</scp>s in a cohort of colorectal cancer patients: their characteristics, associations with relapse‐free survival time, and potential time‐varying effects on the risk of relapse","year":2017,"lang":"en","type":"article","venue":"Cancer Medicine","topic":"Genetic factors in colorectal cancer","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"Princess Margaret Cancer Centre; Public Health Ontario; University of Toronto; Memorial University of Newfoundland","funders":"National Cancer Institute; Canadian Institutes of Health Research; University of Toronto; Beatrice Hunter Cancer Research Institute; University of Pennsylvania; Cancer Research Institute","keywords":"Indel; Proportional hazards model; Colorectal cancer; Cohort; Oncology; Copy-number variation; Medicine; Internal medicine; Survival analysis; Genetics; Cancer; Biology; Single-nucleotide polymorphism; Genome; Gene; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002879493,0.000137393,0.0002040568,0.0005144775,0.0002379438,0.0003230072,0.0001893758,0.0002108897,0.0007443779],"category_scores_gemma":[0.0009308667,0.0001193275,0.0003968164,0.000481109,0.0001759347,0.000124348,0.0001874046,0.0001857103,0.00009816528],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002489198,"about_ca_system_score_gemma":0.0002757448,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004570322,"about_ca_topic_score_gemma":0.005994868,"domain_scores_codex":[0.9998598,0.00001785759,0.00001345943,0.00006346119,0.00002720565,0.00001816623],"domain_scores_gemma":[0.9997185,0.0001327597,0.00006713071,0.00003003672,0.00001754773,0.00003413849],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004533424,0.00005627101,0.9793524,0.00002083893,0.00009227393,0.0005466933,0.0000925466,0.002695787,0.008864581,0.0000704218,0.0001302315,0.00762456],"study_design_scores_gemma":[0.00004410814,0.0002333674,0.974501,0.000004244972,0.0001055417,0.002196665,0.0001174583,0.02014357,0.002192135,0.0001441321,0.0003050488,0.00001277389],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9996498,0.00002708759,0.0001791741,0.000005454849,5.129448e-7,0.000002770097,0.00009597815,0.000004954468,0.00003427112],"genre_scores_gemma":[0.9990262,0.00002290865,0.0004322362,0.000004193044,0.000001752294,0.000005853576,0.0004418427,0.000002102483,0.00006295444],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004570322,"threshold_uncertainty_score":0.009087443,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00906657549237565,"score_gpt":0.244430773646591,"score_spread":0.2353641981542154,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}