{"id":"W2618854496","doi":"10.1002/cam4.1074","title":"Germline <scp>INDEL</scp>s and <scp>CNV</scp>s in a cohort of colorectal cancer patients: their characteristics, associations with relapse‐free survival time, and potential time‐varying effects on the risk of relapse","year":2017,"lang":"en","type":"article","venue":"Cancer Medicine","topic":"Genetic factors in colorectal cancer","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"Princess Margaret Cancer Centre; Public Health Ontario; University of Toronto; Memorial University of Newfoundland","funders":"National Cancer Institute; Canadian Institutes of Health Research; University of Toronto; Beatrice Hunter Cancer Research Institute; University of Pennsylvania; Cancer Research Institute","keywords":"Indel; Proportional hazards model; Colorectal cancer; Cohort; Oncology; Copy-number variation; Medicine; Internal medicine; Survival analysis; Genetics; Cancer; Biology; Single-nucleotide polymorphism; Genome; Gene; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0009528277,0.000427351,0.001246393,0.0001949381,0.0002794329,0.0000225395,0.0003419821,0.0002548757,0.00005631641],"category_scores_gemma":[0.007516864,0.000269504,0.00007971304,0.0002414919,0.0009875336,0.0001012201,0.0002031711,0.0006757368,0.00000239963],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002945687,"about_ca_system_score_gemma":0.0003219956,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001929297,"about_ca_topic_score_gemma":0.0004279794,"domain_scores_codex":[0.9972159,0.0002282552,0.0007003292,0.0005732743,0.0008201753,0.0004620386],"domain_scores_gemma":[0.9950554,0.002227865,0.001216794,0.0007279043,0.00054124,0.00023081],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003261554,0.0001815973,0.9757362,0.0002570949,0.0006363785,0.00001943835,0.00200319,0.00002753691,0.01508801,0.00001158113,0.00289918,0.002813647],"study_design_scores_gemma":[0.00673872,0.002012803,0.976916,0.001702745,0.00082478,0.000007387453,0.000132035,0.000893968,0.01040735,0.00007559311,0.000201944,0.00008669199],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9934056,0.001467337,0.000008774124,0.0006690588,0.0007674732,0.001562789,0.000640067,0.00002826124,0.001450671],"genre_scores_gemma":[0.9962026,0.002244069,0.00006840486,0.0002118421,0.0004028618,0.0001952939,0.00008643029,0.00006929209,0.0005192269],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006564036,"threshold_uncertainty_score":0.9999757,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00906657549237565,"score_gpt":0.244430773646591,"score_spread":0.2353641981542154,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}