{"id":"W2619938970","doi":"10.1038/ismej.2017.83","title":"Co-evolution with <i>Staphylococcus aureus</i> leads to lipopolysaccharide alterations in <i>Pseudomonas aeruginosa</i>","year":2017,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Bacterial Genetics and Biotechnology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":105,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Canadian Institutes of Health Research; Royal Society; Cystic Fibrosis Canada; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; National Science Foundation","keywords":"Pseudomonas aeruginosa; Staphylococcus aureus; Biology; Microbiology; Lipopolysaccharide; Staphylococcal infections; Bacteria; Immunology; Genetics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003126717,0.0001548964,0.000143034,0.00006579373,0.0005892388,0.0002102916,0.0006618551,0.0001627061,0.00001418193],"category_scores_gemma":[0.00005131063,0.000102318,0.00005885065,0.00004464292,0.0001677695,0.00000927472,0.0001106375,0.0003022204,0.00001818643],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002914361,"about_ca_system_score_gemma":0.0001270086,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007461929,"about_ca_topic_score_gemma":0.0006921873,"domain_scores_codex":[0.9990518,0.00005418309,0.0002201323,0.0002180642,0.0001387092,0.0003171217],"domain_scores_gemma":[0.9990007,0.000006050182,0.0001818249,0.0006311067,0.00008124988,0.00009910413],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001270558,0.00003600448,0.00398094,0.000001668328,0.00002122429,0.000007994434,0.00004115811,0.0001425269,0.9920515,0.0002579279,0.002447358,0.0008846825],"study_design_scores_gemma":[0.0008148243,0.0005965059,0.01458541,0.00002971497,0.00002221458,0.0001747183,0.0000659116,0.00001855093,0.9585819,0.000350042,0.02452312,0.0002371328],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.989031,0.0001545402,0.002060472,0.007638366,0.0002868803,0.0001837999,0.00001650486,0.000007536921,0.0006208928],"genre_scores_gemma":[0.9974746,0.0001282917,0.0006128906,0.0006561407,0.0007498233,0.0000134846,0.000007852976,0.00001777492,0.0003392097],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03346961,"threshold_uncertainty_score":0.4532008,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009393115000083295,"score_gpt":0.2540178194872493,"score_spread":0.244624704487166,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}