{"id":"W2620480106","doi":"","title":"Systematic Identification of Factors for Provirus Silencing in Embryonic Stem Cells","year":2015,"lang":"en","type":"article","venue":"DSpace@MIT (Massachusetts Institute of Technology)","topic":"Virus-based gene therapy research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; Provirus; Chromatin; Gene silencing; SUMO protein; Embryonic stem cell; Endogenous retrovirus; Genetics; Psychological repression; Histone; Epigenetics; Retrotransposon; Polycomb-group proteins; Cell biology; Genome; Transcription factor; Repressor; Gene; Transposable element; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008188079,0.0002422228,0.000524644,0.0006109792,0.00004713412,0.00001428395,0.0006920305,0.000461744,0.000001281392],"category_scores_gemma":[0.0003833151,0.0002278161,0.0001390736,0.0005638406,0.0003089024,0.00002165119,0.0001542546,0.0001762219,0.000005266828],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001157986,"about_ca_system_score_gemma":0.0003785146,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002280384,"about_ca_topic_score_gemma":0.0002728828,"domain_scores_codex":[0.9980525,0.00007212242,0.000719533,0.0004637428,0.0003118883,0.0003802124],"domain_scores_gemma":[0.9980985,0.00002551892,0.0005242368,0.0009323794,0.0003411431,0.00007824994],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003528311,0.0001315103,0.001497358,0.002203936,0.0001459694,0.000002206407,0.0001617995,0.0005919574,0.9939904,0.0001776669,0.0002110837,0.0005333044],"study_design_scores_gemma":[0.001089344,0.001281598,0.00005202056,0.0004067115,0.00004096931,0.000002780074,0.0007532557,0.0002460848,0.9952493,0.0001209609,0.0005507474,0.0002062552],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9943356,0.001919673,0.001432788,0.0002513108,0.0002793333,0.00159803,0.00009399087,0.00004520538,0.00004408906],"genre_scores_gemma":[0.998574,0.00008006443,0.0006657154,0.00001103745,0.00002451054,0.0002172966,0.00003337874,0.0000360033,0.0003580362],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004238379,"threshold_uncertainty_score":0.9290071,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02751374982287667,"score_gpt":0.2863770765063734,"score_spread":0.2588633266834967,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}