{"id":"W2621133236","doi":"10.1128/genomea.00461-17","title":"Complete Genome Sequence of a Community-Associated Methicillin-Resistant Staphylococcus aureus Hypervirulent Strain, USA300-C2406, Isolated from a Patient with a Lethal Case of Necrotizing Pneumonia","year":2017,"lang":"en","type":"article","venue":"Genome Announcements","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"Calgary Laboratory Services; University of Calgary; Alberta Health Services","funders":"Canadian Institutes of Health Research; Government of Canada; Alberta Health Services","keywords":"Staphylococcus aureus; Whole genome sequencing; Pneumonia; Strain (injury); Virulence; Methicillin-resistant Staphylococcus aureus; Microbiology; Biology; Genome; Medicine; Gene; Bacteria; Genetics; Internal medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0009020825,0.0006265353,0.001479448,0.0002605292,0.001088668,0.0001031391,0.0007746245,0.0002738704,0.00009586797],"category_scores_gemma":[0.0003458845,0.0005621595,0.000280886,0.0003762354,0.001018649,0.0002432005,0.0004925067,0.001005197,0.0000152969],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005412182,"about_ca_system_score_gemma":0.0005123251,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01320811,"about_ca_topic_score_gemma":0.001635242,"domain_scores_codex":[0.9957064,0.0004596628,0.001411527,0.0005897033,0.0009491802,0.0008834727],"domain_scores_gemma":[0.9936835,0.0002290571,0.002128447,0.002259626,0.001370994,0.0003284085],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001645382,0.0009706103,0.003865473,0.0002986918,0.001269474,0.003496021,0.006476471,0.000154523,0.9812216,0.00002469564,0.00001626979,0.0005607752],"study_design_scores_gemma":[0.06707197,0.05128862,0.707177,0.01316585,0.009067371,0.001419198,0.05309136,0.002782356,0.04728628,0.002115616,0.03603908,0.009495289],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9770679,0.0004255309,0.0004857004,0.0002283329,0.0001302199,0.001637087,0.01942915,0.00005775016,0.0005383212],"genre_scores_gemma":[0.9962969,0.00008280996,0.001812445,0.0003483936,0.00003790987,0.00005352766,0.001205277,0.00008497838,0.00007778476],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9339353,"threshold_uncertainty_score":0.999683,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06961089095333539,"score_gpt":0.3063075633700553,"score_spread":0.2366966724167199,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}