{"id":"W2621133236","doi":"10.1128/genomea.00461-17","title":"Complete Genome Sequence of a Community-Associated Methicillin-Resistant Staphylococcus aureus Hypervirulent Strain, USA300-C2406, Isolated from a Patient with a Lethal Case of Necrotizing Pneumonia","year":2017,"lang":"en","type":"article","venue":"Genome Announcements","topic":"Antimicrobial Resistance in Staphylococcus","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"Calgary Laboratory Services; University of Calgary; Alberta Health Services","funders":"Canadian Institutes of Health Research; Government of Canada; Alberta Health Services","keywords":"Staphylococcus aureus; Whole genome sequencing; Pneumonia; Strain (injury); Virulence; Methicillin-resistant Staphylococcus aureus; Microbiology; Biology; Genome; Medicine; Gene; Bacteria; Genetics; Internal medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002113634,0.0009164495,0.0007013304,0.001322634,0.0005586487,0.0006525182,0.0004649732,0.001157593,0.002318337],"category_scores_gemma":[0.0009953466,0.0002297541,0.0007054771,0.002642467,0.0002789576,0.0003716047,0.0003884005,0.001239931,0.001537842],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003506864,"about_ca_system_score_gemma":0.001281451,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006024378,"about_ca_topic_score_gemma":0.005158395,"domain_scores_codex":[0.999813,0.00002562113,0.00002230977,0.00003918894,0.00006786895,0.00003211162],"domain_scores_gemma":[0.9993284,0.0002304885,0.0001224393,0.00004521903,0.0001679994,0.000105478],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002904928,0.0004095823,0.01290194,0.003615411,0.0001443255,0.007951217,0.0009931672,0.001495655,0.9196398,0.0007175222,0.01548484,0.03374154],"study_design_scores_gemma":[0.0006642049,0.002247399,0.4639705,0.001587306,0.001312215,0.02574953,0.003996835,0.009842847,0.1952378,0.002660547,0.2922034,0.0005273742],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.6506405,0.009357104,0.01145323,0.002085682,0.0008221085,0.0003856378,0.3181867,0.0008370689,0.006232028],"genre_scores_gemma":[0.3968904,0.005103154,0.0292362,0.0005122686,0.0002504628,0.0002190946,0.5642385,0.0003094955,0.003240306],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006024378,"threshold_uncertainty_score":0.01197863,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.06961089095333539,"score_gpt":0.3063075633700553,"score_spread":0.2366966724167199,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}