{"id":"W2622245008","doi":"10.1101/148494","title":"Complex spatio-temporal distribution and genogeographic affinity of mitochondrial DNA haplogroups in 24,216 Danes","year":2017,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Metabolism and Genetic Disorders","field":"Biochemistry, Genetics and Molecular Biology","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; Centre for Addiction and Mental Health","funders":"Novo Nordisk Fonden; Familien Hede Nielsens Fond; H. Lundbeck A/S; Jascha Fonden; Augustinus Fonden; Lundbeckfonden; Strategic Research Council; Novo Nordisk","keywords":"Haplogroup; Haplotype; Mitochondrial DNA; Single-nucleotide polymorphism; Biology; Evolutionary biology; Genetics; Population; Human mitochondrial DNA haplogroup; Demography; Allele; Genotype; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006850561,0.0001202068,0.0002997103,0.001083333,0.0005541072,0.0006673581,0.000273446,0.0002583922,0.0005351357],"category_scores_gemma":[0.001457042,0.0002455368,0.0002648661,0.001112619,0.0004649036,0.0002194659,0.0004392042,0.0001881801,0.0001213086],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004282742,"about_ca_system_score_gemma":0.0001982933,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01548845,"about_ca_topic_score_gemma":0.03597537,"domain_scores_codex":[0.9992887,0.0001828288,0.00008029294,0.0002861851,0.00008366584,0.00007837269],"domain_scores_gemma":[0.9992053,0.0002370883,0.000231774,0.0001337117,0.0001195671,0.00007257007],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001376187,0.00001154767,0.9900703,0.00002021432,0.0001061419,0.0001490382,0.001386747,0.0002402105,0.004696032,0.00007535519,0.0000569712,0.003049732],"study_design_scores_gemma":[0.00000200788,0.0000128173,0.9986889,0.000005691445,0.00001703032,0.0001457288,0.000443854,0.0001303745,0.0002174511,0.00002500732,0.0003074386,0.000003828383],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9996806,0.00007771595,0.00005711488,0.000004459152,5.298079e-7,7.271546e-7,0.0001137065,8.104867e-7,0.00006442762],"genre_scores_gemma":[0.9993124,0.0000719418,0.000126152,0.000003905513,0.000001114016,0.000003590917,0.0003409735,0.000001442473,0.0001385964],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01548845,"threshold_uncertainty_score":0.03079659,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01554632747660531,"score_gpt":0.2281140597934965,"score_spread":0.2125677323168912,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}