{"id":"W2623126700","doi":"10.1136/bmjopen-2016-015008","title":"Assessing the diagnostic accuracy of PCR-based detection of <i>Streptococcus pneumoniae</i> from nasopharyngeal swabs collected for viral studies in Canadian adults hospitalised with community-acquired pneumonia: a Serious Outcomes Surveillance (SOS) Network of the Canadian Immunization Research (CIRN) study","year":2017,"lang":"en","type":"article","venue":"BMJ Open","topic":"Pneumonia and Respiratory Infections","field":"Medicine","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"Nova Scotia Health Authority; Dalhousie University","funders":"Canadian Immunization Research Network; Dalhousie University; Pfizer Canada; Public Health Agency; Canadian Institutes of Health Research; McGill University Health Centre; Public Health Agency of Canada; Pfizer; McMaster University; McGill University; Université Laval","keywords":"Streptococcus pneumoniae; Medicine; Serotype; Pneumonia; Community-acquired pneumonia; Sputum; Multiplex polymerase chain reaction; Virology; Microbiology; Pneumococcal pneumonia; Pneumococcal infections; Internal medicine; Polymerase chain reaction; Biology; Pathology; Antibiotics; Tuberculosis; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.007948941,0.0008900351,0.0006667048,0.001556077,0.00101002,0.001467008,0.001956359,0.0008183206,0.0006999106],"category_scores_gemma":[0.0224931,0.0006069416,0.0008196196,0.001508988,0.001028879,0.0004178126,0.0008354679,0.0005596509,0.0001825479],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.007627203,"about_ca_system_score_gemma":0.006323691,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.7426597,"about_ca_topic_score_gemma":0.7538185,"domain_scores_codex":[0.9935349,0.001432982,0.000723869,0.001046259,0.002430546,0.0008313736],"domain_scores_gemma":[0.9875149,0.002963607,0.002856711,0.0007051122,0.004805106,0.001154511],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003623677,0.00002643693,0.9960766,0.00005063627,0.0001191547,0.00001925049,0.0001447842,0.0001086371,0.0002496513,0.00001371582,0.0001648488,0.002663922],"study_design_scores_gemma":[0.00003369631,0.0002805658,0.9967154,0.00003429678,0.0001747024,0.0001037848,0.0002352878,0.001530744,0.0005040307,0.00001195114,0.0003601245,0.00001540724],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9962596,0.001076746,0.0002695853,0.00009721393,0.00002226772,0.00008039781,0.0009660042,0.00001128481,0.001216929],"genre_scores_gemma":[0.9984773,0.0002626223,0.0004666365,0.00005949025,0.00001721561,0.00001772152,0.0005903328,0.00000305149,0.0001055719],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2573403,"threshold_uncertainty_score":0.5177115,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1324823110497094,"score_gpt":0.4566436185504772,"score_spread":0.3241613075007679,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}