{"id":"W2623917105","doi":"10.1093/bioinformatics/btx347","title":"COMPASS: the COMPletely Arbitrary Sequence Simulator","year":2017,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Carleton University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Compass; Sequence (biology); Computer science; Computer graphics (images); Simulation; Software; Programming language; Cartography; Geography; Biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001303537,0.0001229842,0.0001107226,0.000009940869,0.0006285112,0.0001185704,0.0005805846,0.00005821389,0.000005280287],"category_scores_gemma":[0.00008025663,0.00008383653,0.00007164821,0.00001349289,0.0002405351,0.000002048178,0.0002989294,0.00006327993,0.00003822319],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000006492591,"about_ca_system_score_gemma":0.0000491324,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000153317,"about_ca_topic_score_gemma":0.00001571732,"domain_scores_codex":[0.9993988,0.00001106565,0.000199427,0.00009901561,0.00009968201,0.0001920244],"domain_scores_gemma":[0.9989139,0.00001521973,0.0001687974,0.0007900717,0.00006317811,0.00004885594],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.000369335,0.000368279,0.0956177,0.000547455,0.001851088,0.00002362098,0.005035042,0.003924169,0.6751674,0.02783309,0.09899592,0.09026694],"study_design_scores_gemma":[0.001432906,0.0004458746,0.1351001,0.00003772361,0.00007549868,0.00005606799,0.0007876566,0.03237314,0.04109371,0.001636506,0.7860999,0.0008609431],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9828516,0.0004474137,0.0008750241,0.0007504754,0.0003481635,0.0002379179,0.00008276007,0.000006476575,0.01440014],"genre_scores_gemma":[0.9956612,0.0001548425,0.003008771,0.0007901204,0.0001749075,0.00000814185,0.00001890683,0.000009369459,0.0001737362],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.687104,"threshold_uncertainty_score":0.4834064,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04825999946533854,"score_gpt":0.2838461972233413,"score_spread":0.2355861977580027,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}