{"id":"W2623917105","doi":"10.1093/bioinformatics/btx347","title":"COMPASS: the COMPletely Arbitrary Sequence Simulator","year":2017,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"Carleton University","funders":"Natural Sciences and Engineering Research Council of Canada; Canadian Institutes of Health Research","keywords":"Compass; Sequence (biology); Computer science; Computer graphics (images); Simulation; Software; Programming language; Cartography; Geography; Biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001553329,0.0009451926,0.0008296687,0.000482055,0.0007334977,0.001265878,0.003642957,0.001640285,0.01981011],"category_scores_gemma":[0.007930269,0.0008372056,0.001146922,0.0005199757,0.001205155,0.001794259,0.002043854,0.002032131,0.006482422],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008157659,"about_ca_system_score_gemma":0.002656179,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005579917,"about_ca_topic_score_gemma":0.003819714,"domain_scores_codex":[0.9989517,0.0003366131,0.00007612548,0.0002208902,0.0002815476,0.0001332306],"domain_scores_gemma":[0.9972557,0.001404331,0.0001535266,0.0005600596,0.0003942406,0.0002321808],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.001377148,0.0003046585,0.009212828,0.001218915,0.0003292541,0.0006514843,0.0004199385,0.7016456,0.01706153,0.1115037,0.09571441,0.06056065],"study_design_scores_gemma":[0.0001414217,0.00008762679,0.0002474246,0.00003624022,0.0000237079,0.00009787706,0.0000216592,0.9313631,0.006872223,0.02952247,0.03153323,0.00005299918],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"methods","genre_gemma":"software","genre_scores_codex":[0.04958721,0.0005074864,0.7792048,0.001048205,0.0007544709,0.0005735463,0.01352349,0.1310218,0.02377896],"genre_scores_gemma":[0.5155262,0.0006356667,0.4229585,0.001225867,0.0001701628,0.002029473,0.01996797,0.02366067,0.01382551],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.01981011,"threshold_uncertainty_score":0.06627142,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04825999946533854,"score_gpt":0.2838461972233413,"score_spread":0.2355861977580027,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}