{"id":"W2636085960","doi":"10.1038/ismej.2017.95","title":"Unexpected genomic features in widespread intracellular bacteria: evidence for motility of marine chlamydiae","year":2017,"lang":"en","type":"article","venue":"The ISME Journal","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":35,"is_retracted":false,"has_abstract":true,"ca_institutions":"Genome British Columbia; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Universität Wien; Austrian Science Fund; Tula Foundation; Compute Canada; Canadian Institute for Advanced Research; National Science Foundation","keywords":"Chlamydiae; Biology; Flagellum; Intracellular parasite; Genome; Obligate; Chlamydiales; Chlamydiaceae; Microbiology; Evolutionary biology; Gene; Bacteria; Genetics; Ecology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001921978,0.0001178154,0.0002611289,0.0001215097,0.0005585735,0.00007038498,0.0007237621,0.0001298252,0.0004941232],"category_scores_gemma":[0.002965963,0.00007900842,0.0001127716,0.00005969515,0.0004778842,0.0002573219,0.0002107209,0.0008565747,0.0000336032],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001037037,"about_ca_system_score_gemma":0.0001559208,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005186152,"about_ca_topic_score_gemma":0.0001670638,"domain_scores_codex":[0.9987491,0.0003576213,0.0003398711,0.0002006081,0.00004899046,0.0003038477],"domain_scores_gemma":[0.9980533,0.0005747021,0.0003492753,0.0007731074,0.0002299699,0.00001970582],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0005228914,0.0001154246,0.0376685,0.00001693448,0.0001269099,0.000003319321,0.0002807983,0.00002360107,0.9526027,0.0001170837,0.0004836027,0.008038266],"study_design_scores_gemma":[0.0005957407,0.0001267135,0.7354285,0.00004767138,0.0000216186,0.0002632474,0.00005134841,0.000004021078,0.2612603,0.001431179,0.0007168016,0.00005288047],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9946719,0.001418075,0.0001704503,0.002297788,0.0008088297,0.0003882201,0.000008999757,0.000009005801,0.000226771],"genre_scores_gemma":[0.9976874,0.0003540415,0.0001725014,0.00000901625,0.0001407173,0.00001831063,0.000004342938,0.00001161081,0.00160207],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.69776,"threshold_uncertainty_score":0.5410302,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05840313239461711,"score_gpt":0.3497236547835126,"score_spread":0.2913205223888956,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}