{"id":"W2690857877","doi":"10.1101/151712","title":"Persistent homology demarcates a leaf morphospace","year":2017,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Morphological variations and asymmetry","field":"Mathematics","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"","keywords":"Persistent homology; Homology (biology); Biology; Phylogenetic tree; Phylogenetics; Measure (data warehouse); Evolutionary biology; Botany; Computer science; Genetics; Gene; Data mining; Algorithm","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005812138,0.0001928962,0.0003551467,0.002224895,0.0004271813,0.001357545,0.0003465441,0.0002652644,0.002601157],"category_scores_gemma":[0.001923751,0.0001470195,0.0003404186,0.001176732,0.001327768,0.0009226692,0.00119408,0.0004373057,0.0003348821],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004378646,"about_ca_system_score_gemma":0.000232085,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009528516,"about_ca_topic_score_gemma":0.0009829768,"domain_scores_codex":[0.9996248,0.00008794583,0.00002113219,0.0001325341,0.00008892499,0.00004469059],"domain_scores_gemma":[0.9983178,0.0006764783,0.0003675929,0.000350581,0.000168745,0.0001187532],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0008384474,0.0001394373,0.24833,0.000349298,0.0002328939,0.0004126284,0.002170423,0.0470319,0.4025773,0.1010647,0.002610441,0.1942426],"study_design_scores_gemma":[0.00003602374,0.0002041076,0.6460454,0.00005010414,0.00006328395,0.001084272,0.00141532,0.2280618,0.03343476,0.08312241,0.006393166,0.00008934098],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.89574,0.0001025614,0.09981439,0.00009913801,0.000005802885,0.00001451009,0.0006606164,0.0002796747,0.003283277],"genre_scores_gemma":[0.990519,0.00001595396,0.008854427,0.00001251625,0.00000499317,0.000009118576,0.0003057884,0.00004637087,0.0002319404],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002601157,"threshold_uncertainty_score":0.008701682,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04164991510434868,"score_gpt":0.2667253979037263,"score_spread":0.2250754827993776,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}