{"id":"W2690857877","doi":"10.1101/151712","title":"Persistent homology demarcates a leaf morphospace","year":2017,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Morphological variations and asymmetry","field":"Mathematics","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"","keywords":"Persistent homology; Homology (biology); Biology; Phylogenetic tree; Phylogenetics; Measure (data warehouse); Evolutionary biology; Botany; Computer science; Genetics; Gene; Data mining; Algorithm","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0009483256,0.000694542,0.0009892131,0.0002568231,0.000492631,0.0003632036,0.001280577,0.001025892,0.0003168011],"category_scores_gemma":[0.001763813,0.000653336,0.0005185441,0.000194441,0.0002669119,0.0001166075,0.001238001,0.001206076,0.0002262309],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000267297,"about_ca_system_score_gemma":0.0003812265,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000948206,"about_ca_topic_score_gemma":0.000002499209,"domain_scores_codex":[0.9967917,0.0002001348,0.0006278387,0.001204309,0.0004129046,0.0007630757],"domain_scores_gemma":[0.9951838,0.0003008926,0.0009274554,0.002781349,0.0004728424,0.0003336381],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"observational","study_design_scores_codex":[0.0002095428,0.004300951,0.0402369,0.005242121,0.004618862,0.002203982,0.0001130273,0.0001793207,0.366927,0.4148129,0.1611416,0.00001377627],"study_design_scores_gemma":[0.009773279,0.001808472,0.4885143,0.006652462,0.007726471,0.000002279116,0.0001232727,0.007794071,0.2485162,0.007008566,0.2027963,0.01928439],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9700201,0.003544025,0.01633341,0.003269116,0.002911755,0.001807871,0.0005233845,0.001130578,0.000459741],"genre_scores_gemma":[0.9416698,0.0002285409,0.05686141,0.0001940104,0.0005024304,0.0002716672,4.44431e-7,0.0001381438,0.0001335058],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4482774,"threshold_uncertainty_score":0.9995918,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04164991510434868,"score_gpt":0.2667253979037263,"score_spread":0.2250754827993776,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}