{"id":"W2711910737","doi":"10.1186/s12711-017-0326-1","title":"Analysis of the genetic variation in mitochondrial DNA, Y-chromosome sequences, and MC1R sheds light on the ancestry of Nigerian indigenous pigs","year":2017,"lang":"en","type":"article","venue":"Genetics Selection Evolution","topic":"Genetic and phenotypic traits in livestock","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"Royal Ontario Museum","funders":"Natural Sciences and Engineering Research Council of Canada; Sino-Africa Joint Research Center, Chinese Academy of Sciences; Youth Innovation Promotion Association of the Chinese Academy of Sciences; Youth Innovation Promotion Association; Chinese Academy of Sciences","keywords":"Haplotype; Biology; Mitochondrial DNA; Genetic variation; Genetics; Evolutionary biology; Wild boar; NIP; Genetic diversity; Lineage (genetic); Introgression; Genotype; Gene; Population; Demography; Ecology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001676107,0.0001424118,0.000185799,0.0001058612,0.0003015292,0.00002684488,0.0003475184,0.0001973998,0.0000159363],"category_scores_gemma":[0.0001064108,0.0001060589,0.00009431267,0.0002990046,0.0002021372,0.000005640353,0.00007787777,0.0001126813,6.412936e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000419196,"about_ca_system_score_gemma":0.0001678931,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002264987,"about_ca_topic_score_gemma":0.0009765929,"domain_scores_codex":[0.9988034,0.0001554599,0.0003326348,0.0003121629,0.0002115047,0.0001848856],"domain_scores_gemma":[0.9988339,0.00001996206,0.0004127288,0.0005826583,0.0001166278,0.00003415165],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00008659436,0.0001018783,0.1832749,0.00001939368,0.0002509614,8.683112e-8,0.0006276449,0.01892562,0.7950972,0.0007862698,0.00004843017,0.0007810311],"study_design_scores_gemma":[0.0002772995,0.0003279419,0.941314,0.00001381769,0.0001776193,0.000002643343,0.00004216867,0.000657208,0.05543225,0.001567547,0.0000768746,0.0001106008],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9940586,0.0003621787,0.00446884,0.0001434411,0.000404045,0.0003296508,0.00002848026,0.000003511052,0.000201263],"genre_scores_gemma":[0.9981775,0.00009429296,0.001385533,0.00003265748,0.0001890993,0.00002241062,0.00001128285,0.0000107334,0.00007648688],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7580391,"threshold_uncertainty_score":0.4324956,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01014700953064787,"score_gpt":0.2333935683263637,"score_spread":0.2232465587957159,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}