{"id":"W2711910737","doi":"10.1186/s12711-017-0326-1","title":"Analysis of the genetic variation in mitochondrial DNA, Y-chromosome sequences, and MC1R sheds light on the ancestry of Nigerian indigenous pigs","year":2017,"lang":"en","type":"article","venue":"Genetics Selection Evolution","topic":"Genetic and phenotypic traits in livestock","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"Royal Ontario Museum","funders":"Natural Sciences and Engineering Research Council of Canada; Sino-Africa Joint Research Center, Chinese Academy of Sciences; Youth Innovation Promotion Association of the Chinese Academy of Sciences; Youth Innovation Promotion Association; Chinese Academy of Sciences","keywords":"Haplotype; Biology; Mitochondrial DNA; Genetic variation; Genetics; Evolutionary biology; Wild boar; NIP; Genetic diversity; Lineage (genetic); Introgression; Genotype; Gene; Population; Demography; Ecology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002221015,0.0001849758,0.0001264488,0.0005327135,0.0002043903,0.000191579,0.00009778792,0.0001426953,0.001225322],"category_scores_gemma":[0.0003209053,0.0000623287,0.000100297,0.0004365682,0.0002301764,0.0001150981,0.0001606336,0.0001440432,0.0001193976],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001030784,"about_ca_system_score_gemma":0.0001049649,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001257936,"about_ca_topic_score_gemma":0.002120097,"domain_scores_codex":[0.9999356,0.00001177181,0.000004054085,0.00002621935,0.000008435873,0.00001391712],"domain_scores_gemma":[0.999777,0.00006542786,0.0001115714,0.00001020563,0.00001657732,0.00001929024],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004363935,0.00006089619,0.7443618,0.0001441595,0.0001056229,0.0006727907,0.0008796004,0.000343083,0.2222302,0.0003247235,0.00008514248,0.03035552],"study_design_scores_gemma":[0.000004971449,0.00009710257,0.994439,0.00003285735,0.00003560467,0.0006036661,0.0002530282,0.0002692403,0.003511274,0.00008341869,0.0006660711,0.000003753925],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989514,0.0003401796,0.0003121403,0.00001416676,0.000002406319,0.000003206084,0.0001065105,0.000001562458,0.0002682999],"genre_scores_gemma":[0.9987471,0.0002583826,0.0006385811,0.000009314366,0.000004475932,0.00000582121,0.000166301,0.000001254468,0.0001687294],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001257936,"threshold_uncertainty_score":0.004099131,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01014700953064787,"score_gpt":0.2333935683263637,"score_spread":0.2232465587957159,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}