{"id":"W2724118546","doi":"10.1038/ng.3902","title":"Epigenetic modifier drugs trigger widespread transcription of endogenous retroviruses","year":2017,"lang":"en","type":"article","venue":"Nature Genetics","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of British Columbia; BC Cancer Agency","funders":"","keywords":"Biology; Endogenous retrovirus; Epigenetics; Epigenome; Transcription (linguistics); Genetics; Endogeny; Transcription factor; Gene; Computational biology; Genome; DNA methylation; Gene expression","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003046539,0.000317851,0.0004711863,0.0003777701,0.0001687956,0.0007416225,0.0002919045,0.0005052884,0.003015027],"category_scores_gemma":[0.0004264517,0.000275393,0.0003881856,0.0001898131,0.0004034517,0.0003122825,0.0004096405,0.001106664,0.0005820179],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005692979,"about_ca_system_score_gemma":0.0001884796,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003388764,"about_ca_topic_score_gemma":0.0008159741,"domain_scores_codex":[0.9994941,0.00007421618,0.00002817133,0.0001240229,0.0001284321,0.0001511475],"domain_scores_gemma":[0.9996169,0.0001657939,0.00006926724,0.00007148082,0.00002219169,0.00005440349],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001597432,0.00004936986,0.0001689059,0.00001619812,0.000006550016,0.00004538801,0.000008418797,0.0001004518,0.9970211,0.0003541878,0.00006357791,0.002006063],"study_design_scores_gemma":[0.00002851986,0.0003360765,0.002114877,0.000003848547,0.00001213006,0.0001124005,0.00002033396,0.0009509403,0.9954847,0.0001707055,0.0007617378,0.00000378745],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9856663,0.002692801,0.005931521,0.000217386,0.0001226098,0.00007193656,0.000493079,0.000357139,0.004447336],"genre_scores_gemma":[0.9965467,0.0003544415,0.001076813,0.0000803385,0.00001937111,0.00002100141,0.0001982085,0.00004523137,0.001657921],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003015027,"threshold_uncertainty_score":0.0100863,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01454806736049112,"score_gpt":0.2524512162280808,"score_spread":0.2379031488675897,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}