{"id":"W2726178529","doi":"10.1093/gbe/evx123","title":"Evolutionary Dynamics of Cryptophyte Plastid Genomes","year":2017,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":74,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"","keywords":"Plastid; Biology; Lineage (genetic); Genome; Endosymbiosis; Phylogenetic tree; Synteny; Evolutionary biology; Phylogenetics; Gene; Genetics; Botany; Chloroplast","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004047588,0.0003087004,0.000311951,0.002184457,0.0006498949,0.0009810878,0.0004472372,0.0004521635,0.001249951],"category_scores_gemma":[0.001081856,0.0001981445,0.0003124743,0.001815523,0.0002866589,0.0005877654,0.0007836904,0.0007081544,0.000340751],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009378086,"about_ca_system_score_gemma":0.0005055787,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002248116,"about_ca_topic_score_gemma":0.002729812,"domain_scores_codex":[0.9996035,0.00002858906,0.00002215843,0.0001930717,0.0000830588,0.00006967476],"domain_scores_gemma":[0.9989862,0.0001842612,0.0002433754,0.00009229845,0.0002474814,0.0002463642],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00140715,0.0001031682,0.1878103,0.0007195075,0.0001943869,0.001001094,0.002790496,0.002281078,0.7219563,0.002818124,0.0005631986,0.07835516],"study_design_scores_gemma":[0.00005094959,0.000294088,0.9266573,0.0001247148,0.0001409082,0.002494773,0.001767279,0.004832398,0.02432447,0.001133209,0.03810944,0.00007046059],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9941052,0.001358693,0.001101931,0.0001146073,0.000008013491,0.00001626675,0.001807946,0.00005363122,0.001433599],"genre_scores_gemma":[0.9844857,0.001501095,0.005431176,0.0000898788,0.00001490274,0.00002234198,0.006922442,0.00003981658,0.00149258],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002248116,"threshold_uncertainty_score":0.006804287,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007706555868391131,"score_gpt":0.2280432050385434,"score_spread":0.2203366491701522,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}