{"id":"W2727134083","doi":"10.1093/bioinformatics/btx441","title":"Reactome enhanced pathway visualization","year":2017,"lang":"en","type":"article","venue":"Bioinformatics","topic":"Bioinformatics and Genomic Networks","field":"Biochemistry, Genetics and Molecular Biology","cited_by":187,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; Ontario Institute for Cancer Research","funders":"National Institutes of Health; National Human Genome Research Institute; University of Toronto; European Bioinformatics Institute","keywords":"Scalable Vector Graphics; Computer science; Visualization; Hierarchy; Scalability; World Wide Web; Information retrieval; Data mining; Database","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00163705,0.00184524,0.001019828,0.003417844,0.0006431552,0.002426672,0.001883892,0.001515269,0.05453542],"category_scores_gemma":[0.005297044,0.0007189634,0.001959961,0.002695399,0.0003987004,0.00261131,0.002638889,0.001926427,0.01313518],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008103607,"about_ca_system_score_gemma":0.001343779,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002506479,"about_ca_topic_score_gemma":0.002689517,"domain_scores_codex":[0.9991409,0.0001874808,0.00006363935,0.0001998782,0.0003368153,0.00007135567],"domain_scores_gemma":[0.997961,0.0008628267,0.0001379085,0.0003330107,0.0005377394,0.0001674694],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.002995416,0.0002655261,0.007109234,0.007844351,0.0007242606,0.001680368,0.001372683,0.04869185,0.1224083,0.04868811,0.5552223,0.2029976],"study_design_scores_gemma":[0.000463671,0.0001431643,0.004434444,0.0005037937,0.0002432842,0.001383359,0.0002716056,0.1791391,0.1138291,0.05325707,0.646041,0.0002903456],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"methods","genre_gemma":"software","genre_scores_codex":[0.02169681,0.001642177,0.4593753,0.002499009,0.0007972132,0.0002859838,0.1225005,0.368179,0.02302407],"genre_scores_gemma":[0.2123819,0.003651989,0.5001441,0.001373007,0.0003409139,0.001461598,0.2122041,0.04396749,0.02447491],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.05453542,"threshold_uncertainty_score":0.1824391,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01236784390598909,"score_gpt":0.2603399107743852,"score_spread":0.2479720668683962,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}