{"id":"W2730381845","doi":"10.1094/phyto-02-17-0061-r","title":"An Analysis of the Complete Genome Sequence and Subgenomic RNAs Reveals Unique Features of the Ampelovirus, <i>Grapevine leafroll-associated virus 1</i>","year":2017,"lang":"en","type":"article","venue":"Phytopathology","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":22,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Northwest Center for Small Fruits Research; Washington State University","keywords":"ORFS; Biology; Citrus tristeza virus; Subgenomic mRNA; Genetics; Genome; Closterovirus; Virology; Gene; Sequence analysis; Virus; Open reading frame; Plant virus; Peptide sequence","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00005907375,0.0003194094,0.0002406849,0.0002986074,0.0002133451,0.0002976626,0.0001477738,0.0002106054,0.0007830547],"category_scores_gemma":[0.0001419883,0.0001325185,0.0003521666,0.0002054523,0.0001601223,0.0001828355,0.0001344421,0.0004921413,0.0003761031],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002719139,"about_ca_system_score_gemma":0.0002351239,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001621334,"about_ca_topic_score_gemma":0.002738961,"domain_scores_codex":[0.9999291,0.000003896018,0.000003054487,0.00003404689,0.00001449094,0.00001538063],"domain_scores_gemma":[0.9998522,0.00003456497,0.00004149006,0.00001385397,0.00002131869,0.00003658812],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000513565,0.000009132842,0.001253882,0.00004278598,0.000005354048,0.00005127751,0.00004287474,0.00003402654,0.9970988,0.00003052019,0.00002086591,0.001359162],"study_design_scores_gemma":[0.00002814428,0.001205083,0.51754,0.00005133591,0.0002075121,0.00248006,0.0005517721,0.001989753,0.4570384,0.0003375261,0.01853228,0.00003810351],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.991574,0.001273934,0.002617284,0.00004105937,0.00001705006,0.00003638773,0.003363165,0.00004471957,0.001032431],"genre_scores_gemma":[0.9581044,0.001736907,0.007338842,0.0001187403,0.00003447626,0.00006329265,0.02969095,0.00005750936,0.002854889],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001621334,"threshold_uncertainty_score":0.003223717,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04867458917819393,"score_gpt":0.2879508471333136,"score_spread":0.2392762579551197,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}