{"id":"W2731127194","doi":"10.1371/journal.pone.0180123","title":"Strand specific RNA-sequencing and membrane lipid profiling reveals growth phase-dependent cold stress response mechanisms in Listeria monocytogenes","year":2017,"lang":"en","type":"article","venue":"PLoS ONE","topic":"Listeria monocytogenes in Food Safety","field":"Biochemistry, Genetics and Molecular Biology","cited_by":42,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Alberta Innovates; Alberta Innovates Bio Solutions; Natural Sciences and Engineering Research Council of Canada; University of British Columbia","keywords":"Listeria monocytogenes; RNA; Biology; Listeria; Microbiology; Genetics; Bacteria; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001103286,0.0002619322,0.0002311449,0.0002365656,0.0001368932,0.0002956105,0.0001147027,0.0002429418,0.0003689419],"category_scores_gemma":[0.0002002869,0.0001733305,0.0003092259,0.0001651596,0.0001297032,0.0001075415,0.0001679894,0.0002381706,0.0002706074],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001623248,"about_ca_system_score_gemma":0.0002010682,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008263938,"about_ca_topic_score_gemma":0.001400018,"domain_scores_codex":[0.9998958,0.000009251452,0.000006926771,0.00004183322,0.0000254135,0.00002083229],"domain_scores_gemma":[0.9998484,0.00003516072,0.00004126254,0.00001455902,0.00004071381,0.00001992181],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005842217,0.00000364779,0.0006490686,0.00001115715,0.000001692802,0.00000954236,0.00001766346,0.0000315112,0.9987592,0.000004937437,0.00001077268,0.0004424409],"study_design_scores_gemma":[0.00001485915,0.000592918,0.1581237,0.00001873853,0.00005644984,0.0002947103,0.0002526986,0.002850056,0.8358699,0.00009219794,0.001809963,0.00002387068],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9956054,0.0004004712,0.002416742,0.00003182934,0.00001088326,0.00001031262,0.001129817,0.00004541719,0.0003491094],"genre_scores_gemma":[0.9840366,0.0005038999,0.007334481,0.0002018985,0.00001629298,0.00006399376,0.005633678,0.00007177728,0.00213728],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0008263938,"threshold_uncertainty_score":0.00164324,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.136025598158532,"score_gpt":0.3150243948517026,"score_spread":0.1789987966931706,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}