{"id":"W2731670851","doi":"10.1101/156554","title":"Selection constrains high rates of satellite DNA mutation in <i>Daphnia pulex</i>","year":2017,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"Natural Sciences and Engineering Research Council of Canada; National Institutes of Health; Ministerio de Economía y Competitividad","keywords":"Satellite DNA; Biology; Daphnia pulex; Mutation rate; Genetics; Population; Genome; Evolutionary biology; Satellite; Selective sweep; Mutation; DNA sequencing; Abundance (ecology); DNA; Gene; Allele; Daphnia; Ecology; Haplotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001425195,0.0001399058,0.0002180599,0.000374494,0.0001661343,0.0002936611,0.0001735499,0.0001557391,0.0005014297],"category_scores_gemma":[0.0002835426,0.0001394705,0.0001195503,0.0001808544,0.0001995015,0.000151168,0.0002331314,0.0001941309,0.0001316059],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000308371,"about_ca_system_score_gemma":0.00009652544,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001093598,"about_ca_topic_score_gemma":0.001782335,"domain_scores_codex":[0.9998953,0.0000175999,0.00001030563,0.00003697915,0.00002190376,0.00001788683],"domain_scores_gemma":[0.9997616,0.00007294134,0.00007950205,0.00002532783,0.00003250403,0.000028046],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000703017,0.00001206562,0.04692822,0.00002479802,0.00002397774,0.00009372465,0.00006861589,0.0003732413,0.9498624,0.00006951991,0.00002334812,0.002449701],"study_design_scores_gemma":[0.000009625495,0.0002264858,0.9030757,0.000007189403,0.00003786622,0.0005232987,0.0002845758,0.003073152,0.09162638,0.000121277,0.001000635,0.00001382115],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9994701,0.00003873158,0.0002412963,0.000005783624,7.193057e-7,0.000001701528,0.00004442037,0.000008179555,0.0001891202],"genre_scores_gemma":[0.9996587,0.00002307674,0.000157638,0.000009283759,8.923383e-7,0.000002406792,0.00007404458,0.000002226169,0.00007188524],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001093598,"threshold_uncertainty_score":0.00223738,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01833278235197804,"score_gpt":0.2215658183607813,"score_spread":0.2032330360088033,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}