{"id":"W2735197607","doi":"10.1038/s41598-017-06256-2","title":"Genomic epidemiology of global Klebsiella pneumoniae carbapenemase (KPC)-producing Escherichia coli","year":2017,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":112,"is_retracted":false,"has_abstract":true,"ca_institutions":"Calgary Laboratory Services; University of Calgary","funders":"Public Health England; National Institute for Health Research Health Protection Research Unit; National Institute for Health and Care Research; Wellcome Trust; University of Oxford; Calgary Laboratory Services","keywords":"Biology; Plasmid; Klebsiella pneumoniae; Mobile genetic elements; Escherichia coli; Transposable element; Replicon; Genetics; Whole genome sequencing; Antibiotic resistance; Insertion sequence; Microbiology; Genome; Molecular epidemiology; Multilocus sequence typing; Gene; Genotype; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000252783,0.0002847804,0.0002112576,0.001210768,0.0001879086,0.0006004517,0.0001269966,0.0002613941,0.001029824],"category_scores_gemma":[0.0006886277,0.0001029389,0.0002147315,0.001705096,0.0003050486,0.0002806778,0.0005354987,0.0002425798,0.0001392792],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003135782,"about_ca_system_score_gemma":0.0003383926,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006682648,"about_ca_topic_score_gemma":0.008098122,"domain_scores_codex":[0.9997279,0.00003907157,0.00002250957,0.000105602,0.00006203852,0.00004283188],"domain_scores_gemma":[0.9993568,0.00007945082,0.0002717613,0.00003291,0.0001379621,0.0001211507],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001334135,0.0000174153,0.9708349,0.0001131635,0.00007215195,0.0001917598,0.0004474935,0.0002721672,0.02024988,0.0001241167,0.0002601406,0.007283299],"study_design_scores_gemma":[0.000001638639,0.00004607717,0.9982519,0.00001687653,0.00001759173,0.0002644552,0.0003447853,0.0001098947,0.0004023718,0.00003745058,0.0005032382,0.000003807614],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973295,0.0004305296,0.0003611009,0.00005026684,0.000003803762,0.00001032889,0.001226403,0.000008040608,0.0005799813],"genre_scores_gemma":[0.9977282,0.0004333986,0.0005404961,0.00004473534,0.000008076484,0.000006528659,0.001094502,0.000003813399,0.0001401724],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006682648,"threshold_uncertainty_score":0.01328748,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02080154529967469,"score_gpt":0.2934094300150261,"score_spread":0.2726078847153514,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}