{"id":"W2735521500","doi":"10.1128/iai.00031-17","title":"<i>In Vivo</i>Analysis of the Viable Microbiota and Helicobacter pylori Transcriptome in Gastric Infection and Early Stages of Carcinogenesis","year":2017,"lang":"en","type":"article","venue":"Infection and Immunity","topic":"Helicobacter pylori-related gastroenterology studies","field":"Medicine","cited_by":69,"is_retracted":false,"has_abstract":true,"ca_institutions":"Cancer Care Ontario; Public Health Ontario; University of Toronto","funders":"National Institute of Diabetes and Digestive and Kidney Diseases; Stiftelsen för Strategisk Forskning; VINNOVA; Stiftelsen Assar Gabrielssons Fond; Knut och Alice Wallenbergs Stiftelse; Vetenskapsrådet","keywords":"Biology; Helicobacter pylori; Transcriptome; Helicobacter; Microbiology; Gastritis; Cancer; Stomach; Carcinogenesis; Gastric mucosa; Gene; Immunology; Gene expression; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002772376,0.0001853413,0.0002160244,0.0002750868,0.0001525192,0.0003613442,0.00009942939,0.0002589693,0.001192575],"category_scores_gemma":[0.000149947,0.0001162997,0.0002178576,0.000203809,0.0002283551,0.0002226712,0.000224527,0.0003850899,0.0003053676],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001296044,"about_ca_system_score_gemma":0.0001040885,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003232972,"about_ca_topic_score_gemma":0.0004150969,"domain_scores_codex":[0.9998709,0.00004462547,0.000006762738,0.00003215034,0.00002130649,0.00002421977],"domain_scores_gemma":[0.9999049,0.00001738124,0.00002656669,0.00001142972,0.00001709468,0.00002270701],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002010242,0.00002673812,0.002247986,0.00003023138,0.000008630293,0.00001301261,0.00002047568,0.00003285985,0.9963281,0.00003464528,0.00003677119,0.001019433],"study_design_scores_gemma":[0.00002768269,0.001517177,0.2660059,0.00002723566,0.00008758297,0.0004716902,0.0003871596,0.002227579,0.7251577,0.0003714498,0.00370174,0.00001708869],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9932151,0.001465206,0.003285734,0.0001387268,0.0000359661,0.00002477304,0.0007405991,0.00002659653,0.001067284],"genre_scores_gemma":[0.9946807,0.0005955819,0.002445063,0.0001266267,0.0000245728,0.00004699918,0.0008781047,0.00001529754,0.001187046],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001192575,"threshold_uncertainty_score":0.003989518,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01584088325051463,"score_gpt":0.2572071993784615,"score_spread":0.2413663161279468,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}