{"id":"W2736351160","doi":"10.1038/s41598-017-06860-2","title":"Recent increased identification and transmission of HIV-1 unique recombinant forms in Sweden","year":2017,"lang":"en","type":"article","venue":"Scientific Reports","topic":"HIV Research and Treatment","field":"Immunology and Microbiology","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba","funders":"National Institute of General Medical Sciences; Jeanssons Stiftelser; Sahlgrenska Universitetssjukhuset; Vetenskapsrådet; Stockholms Läns Landsting; Deutsches Zentrum für Infektionsforschung","keywords":"Subtyping; Phylogenetic tree; Human immunodeficiency virus (HIV); Transmission (telecommunications); Biology; Cluster (spacecraft); Genome; Gene; Recombinant DNA; Computational biology; Evolutionary biology; Genetics; Virology; Computer science","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001488776,0.0003216846,0.0004353368,0.001598074,0.0004425767,0.001475318,0.0004303339,0.0006184802,0.001049482],"category_scores_gemma":[0.002587394,0.0003432592,0.0003512174,0.001371059,0.0004572194,0.0003971457,0.0008290131,0.0006216553,0.0004038317],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004098065,"about_ca_system_score_gemma":0.0004183496,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00730163,"about_ca_topic_score_gemma":0.003858308,"domain_scores_codex":[0.9989073,0.0003858624,0.0001226862,0.0002013872,0.0001986971,0.0001840302],"domain_scores_gemma":[0.9975773,0.0004584598,0.001095931,0.0001945752,0.0003940887,0.0002797064],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006616646,0.0001056621,0.9616882,0.0001170849,0.00008532386,0.001176237,0.001609272,0.0005051207,0.004258882,0.0001818833,0.000525309,0.02908543],"study_design_scores_gemma":[0.00001988378,0.0002332811,0.986942,0.00009276802,0.00004269456,0.00401932,0.002983258,0.0009274051,0.002080745,0.0001614266,0.002478155,0.00001922269],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9984689,0.0007043493,0.0002832281,0.00007027129,0.00001258521,0.000003697914,0.0001203446,0.00001666327,0.0003198143],"genre_scores_gemma":[0.9980161,0.0006722364,0.0005147824,0.00004030899,0.00002009321,0.000004892083,0.0003039566,0.00001019654,0.0004174022],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00730163,"threshold_uncertainty_score":0.01451826,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02255332403958536,"score_gpt":0.2944580336365892,"score_spread":0.2719047095970039,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}