{"id":"W2737732224","doi":"10.1038/gim.2017.80","title":"Data sharing as a national quality improvement program: reporting on BRCA1 and BRCA2 variant-interpretation comparisons through the Canadian Open Genetics Repository (COGR)","year":2017,"lang":"en","type":"article","venue":"Genetics in Medicine","topic":"Genomics and Rare Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":31,"is_retracted":false,"has_abstract":false,"ca_institutions":"Ontario Institute for Cancer Research; University of Alberta; Children's Hospital of Eastern Ontario; Shared Health; Sinai Health System; BC Cancer Agency; Queen's University; Alberta Children's Hospital; Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital; University of Calgary; University of Toronto; Hamilton Health Sciences; Women's College Hospital; Credit Valley Hospital; University of Manitoba; Trillium Health Centre; Hamilton Regional Laboratory Medicine Program; North York General Hospital","funders":"Canadian Institutes of Health Research; Government of Canada; Ontario Genomics; Ontario Genomics Institute; Genome Canada","keywords":"Tier 2 network; Tier 1 network; Upload; Medicine; Quality (philosophy); MEDLINE; Computer science; Biology; World Wide Web","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001307719,0.0001567896,0.0002080935,0.00003336819,0.0006522476,0.0002862292,0.00140968,0.0001030105,0.000006679822],"category_scores_gemma":[0.001068199,0.0001224134,0.00002433975,0.00003400709,0.0002463786,0.000008914527,0.001079995,0.0001456102,0.000001130847],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006136645,"about_ca_system_score_gemma":0.0004482806,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.03888094,"about_ca_topic_score_gemma":0.1047258,"domain_scores_codex":[0.9980757,0.0000547337,0.0006917911,0.0006570446,0.0002651026,0.0002556546],"domain_scores_gemma":[0.9974774,0.00002307952,0.0007064475,0.00150545,0.0001519844,0.0001356731],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0008647427,0.001134231,0.675707,0.0003958306,0.001219749,0.0006548209,0.005212273,0.00317215,0.09308927,0.006784833,0.02409237,0.1876727],"study_design_scores_gemma":[0.002720649,0.00112204,0.8865269,0.0002985176,0.000151549,0.0001826139,0.001369751,0.0161377,0.004382085,0.004159632,0.0822769,0.0006716327],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9785028,0.001827202,0.000220156,0.002456039,0.0004524681,0.0009587004,0.00009755811,0.000007105101,0.01547797],"genre_scores_gemma":[0.9956334,0.0003109262,0.001980204,0.001076278,0.0003347923,0.00005134492,0.0004347967,0.00001859431,0.0001596128],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2108199,"threshold_uncertainty_score":0.9675192,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1525526174986491,"score_gpt":0.443352068995106,"score_spread":0.2907994514964569,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}