{"id":"W2737752879","doi":"10.1186/s13148-017-0370-2","title":"Maternal blood contamination of collected cord blood can be identified using DNA methylation at three CpGs","year":2017,"lang":"en","type":"article","venue":"Clinical Epigenetics","topic":"Prenatal Screening and Diagnostics","field":"Medicine","cited_by":86,"is_retracted":false,"has_abstract":true,"ca_institutions":"Learning Partnership; BC Children's Hospital; University of British Columbia","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; Medical Research Council; National Institutes of Health; Signe ja Ane Gyllenbergin Säätiö; Jane ja Aatos Erkon Säätiö; Novo Nordisk Fonden; Foundation for the National Institutes of Health; Academy of Finland; Novo Nordisk; South African Medical Research Council; Päivikki ja Sakari Sohlbergin Säätiö; National Research Foundation; Emil Aaltosen Säätiö; AllerGen; Canadian Institutes of Health Research; Suomen Lääketieteen Säätiö; Helsingin Yliopisto; Bill and Melinda Gates Foundation","keywords":"dNaM; Cord blood; Pyrosequencing; DNA methylation; Epigenetics; Biology; Contamination; Population; Cohort; Medicine; Physiology; Andrology; Bioinformatics; Computational biology; Genetics; Internal medicine; Environmental health; Gene; Ecology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002651681,0.0003724108,0.0003561632,0.001096607,0.0003547139,0.0007555831,0.0005406428,0.0005984948,0.001646698],"category_scores_gemma":[0.007492893,0.0003117943,0.0004181239,0.001311087,0.0005418435,0.0002079582,0.0006086354,0.0005523749,0.0003861749],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000349677,"about_ca_system_score_gemma":0.0003815763,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001647116,"about_ca_topic_score_gemma":0.0027237,"domain_scores_codex":[0.9971637,0.0006846607,0.0002587471,0.0007140261,0.0010366,0.0001422763],"domain_scores_gemma":[0.9950089,0.001776525,0.001939089,0.0005349817,0.0006254832,0.0001149938],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007314984,0.00005982698,0.7640789,0.0005486953,0.0005864725,0.0008752035,0.0007999977,0.0006781074,0.162884,0.0008201834,0.001056483,0.06688063],"study_design_scores_gemma":[0.00002410586,0.0005305712,0.7396618,0.0003155497,0.0005978465,0.004579209,0.0003567353,0.002553001,0.2366425,0.001521948,0.01316556,0.00005119413],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9259546,0.005646586,0.0597777,0.0004548784,0.0001114376,0.0001534265,0.00373399,0.0003624774,0.003804807],"genre_scores_gemma":[0.9667912,0.001363933,0.0283804,0.0004243289,0.00004521498,0.0001354777,0.001668845,0.00007090916,0.001119785],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002651681,"threshold_uncertainty_score":0.0140236,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1221767889658162,"score_gpt":0.3963754564067263,"score_spread":0.2741986674409101,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}