{"id":"W2740453795","doi":"10.1101/169292","title":"<i>Vibrio cholerae</i> genomic diversity within and between patients","year":2017,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal","funders":"Canadian Institutes of Health Research; National Institutes of Health; International Centre for Diarrhoeal Disease Research, Bangladesh; Canada Research Chairs; Styrelsen för Internationellt Utvecklingssamarbete; Global Affairs Canada; Department for International Development; Robert Wood Johnson Foundation","keywords":"Vibrio cholerae; Cholera; Biology; Horizontal gene transfer; Genetics; Nonsynonymous substitution; Plasmid; Cholera toxin; Gene; Genetic diversity; Microbiology; Population; Genome; Bacteria; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002498075,0.0001519103,0.0002546274,0.0004784108,0.0003702212,0.0006293815,0.0001463154,0.0003562486,0.001671668],"category_scores_gemma":[0.001214646,0.00009486576,0.0001621644,0.0005010083,0.0003853049,0.0001858401,0.0004160996,0.000284307,0.0001852286],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002512251,"about_ca_system_score_gemma":0.0001180911,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00197637,"about_ca_topic_score_gemma":0.001438376,"domain_scores_codex":[0.999405,0.0001191534,0.00005693177,0.0002323345,0.00008628465,0.0001003183],"domain_scores_gemma":[0.9993525,0.0001892477,0.0001911093,0.00006122168,0.0001115022,0.00009436643],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004967136,0.00003171798,0.9555515,0.00003099181,0.00008415052,0.0005020482,0.0009134528,0.0002140494,0.03606431,0.0001421922,0.0003718384,0.005597054],"study_design_scores_gemma":[0.000008527588,0.000172131,0.991797,0.00001174434,0.00003318733,0.001925843,0.0007768241,0.0003757458,0.003571836,0.00009499698,0.001219831,0.00001244071],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9991217,0.00007391522,0.0001351002,0.00002718009,0.000002176435,0.000004469147,0.0003357464,0.000002971375,0.0002968141],"genre_scores_gemma":[0.9995209,0.00002567199,0.00009621596,0.00002537041,0.000003063972,0.000004582653,0.0002414877,0.000002855367,0.00007979848],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00197637,"threshold_uncertainty_score":0.005592287,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01740259899714042,"score_gpt":0.2322359543645702,"score_spread":0.2148333553674298,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}