{"id":"W2740898378","doi":"10.1128/genomea.00720-17","title":"Whole-Genome Shotgun Sequences of Salmonella enterica Serovar Typhimurium Lilleengen Type Strains LT1, LT18, LT19, LT20, LT21, and LT22","year":2017,"lang":"en","type":"article","venue":"Genome Announcements","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"University of Calgary; University of Missouri","keywords":"Salmonella enterica; Biology; Salmonella; Serotype; Microbiology; Shotgun; Genome; Shotgun sequencing; Whole genome sequencing; Genetics; Gene; Bacteria","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002203455,0.0006225992,0.0005381177,0.001304258,0.0003969343,0.0004621738,0.0003825772,0.0003359512,0.002558224],"category_scores_gemma":[0.0004567407,0.000247062,0.000662622,0.001645905,0.0001566604,0.0001980918,0.000415338,0.0006154484,0.001297698],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0006118754,"about_ca_system_score_gemma":0.001182266,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007784822,"about_ca_topic_score_gemma":0.01381078,"domain_scores_codex":[0.9998362,0.00001803165,0.00001540877,0.00004064047,0.0000539404,0.00003568597],"domain_scores_gemma":[0.9997047,0.00005210015,0.00006225102,0.00003312844,0.00008322501,0.00006472786],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0009871189,0.0001184828,0.005361517,0.0004408623,0.00005481267,0.0003372836,0.0001803701,0.0004315221,0.9789652,0.0001943452,0.002701332,0.0102271],"study_design_scores_gemma":[0.0003087624,0.002728083,0.4904424,0.0002689945,0.0007423945,0.002420828,0.001575288,0.003283124,0.3773434,0.0004619957,0.1202695,0.0001552688],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.7589629,0.001562553,0.00770792,0.0003578856,0.0002133873,0.0002615892,0.2265169,0.0004688768,0.0039478],"genre_scores_gemma":[0.2959215,0.001614305,0.02434208,0.0003220306,0.00005823216,0.000260848,0.6694375,0.0002012042,0.00784227],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007784822,"threshold_uncertainty_score":0.01547903,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04972846207025747,"score_gpt":0.26858606996282,"score_spread":0.2188576078925626,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}