{"id":"W2741737803","doi":"10.1002/ece3.3049","title":"Escaping introns in <scp>COI</scp> through <scp>cDNA</scp> barcoding of mushrooms: <i>Pleurotus</i> as a test case","year":2017,"lang":"en","type":"article","venue":"Ecology and Evolution","topic":"Fungal Biology and Applications","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Institut Pengurusan dan Pemantauan Penyelidikan, Universiti Malaya; Medical Research Council; Canada First Research Excellence Fund; Ministry of Higher Education, Malaysia; Ministry of Education, India; Universiti Malaya","keywords":"DNA barcoding; Biology; Complementary DNA; Genetics; Mitochondrial DNA; Intron; Oyster; Cytochrome c oxidase subunit I; Gene; Sequence analysis; Pleurotus; Expressed sequence tag; Barcode; Mushroom; Evolutionary biology; Botany; Ecology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000371971,0.0001643852,0.0003571012,0.0001112405,0.0006016544,0.0000127809,0.0001255396,0.0003566297,0.00001615104],"category_scores_gemma":[0.00443168,0.0001588747,0.00006393545,0.0001176546,0.0005479156,0.0001876354,0.0001262189,0.0004091165,0.00007251038],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00008285455,"about_ca_system_score_gemma":0.0001085039,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002703998,"about_ca_topic_score_gemma":0.0007471736,"domain_scores_codex":[0.9987757,0.00008249727,0.0003334045,0.0003690161,0.00006335216,0.0003760749],"domain_scores_gemma":[0.9979264,0.001267651,0.0002395861,0.0004049898,0.00007090584,0.00009050603],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00001363209,0.0003124848,0.9344131,0.0001042893,0.00005957642,0.0002804199,0.001234978,0.00001569636,0.05028202,0.008816764,0.004202163,0.0002648994],"study_design_scores_gemma":[0.001734241,0.0004998792,0.9810625,0.00009429925,0.0001260533,0.001442062,0.001739429,0.0005285609,0.004547659,0.004406671,0.003774558,0.00004411058],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.990023,0.000804084,0.0001908175,0.0009700888,0.0002043908,0.0004242179,0.00002488501,0.00004239659,0.00731614],"genre_scores_gemma":[0.9980196,0.0002560342,0.000454114,0.000280194,0.0001856701,0.00008907355,0.00002404903,0.00001295837,0.0006782723],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0466494,"threshold_uncertainty_score":0.6478723,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01865344509852767,"score_gpt":0.2825525914232561,"score_spread":0.2638991463247284,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}