{"id":"W2742732015","doi":"10.1101/175182","title":"Chlorinated electron acceptor availability selects for specific <i>Dehalococcoides</i> populations in dechlorinating enrichment cultures and in groundwater","year":2017,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Microbial bioremediation and biosurfactants","field":"Environmental Science","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"Strategic Environmental Research and Development Program; Natural Sciences and Engineering Research Council of Canada; European Commission; Government of Ontario; Sustainable Development Technology Canada; Genome Canada; Ontario Genomics; LOEWE Zentrum AdRIA; Ontario Genomics Institute; U.S. Department of Defense","keywords":"Dehalococcoides; Dehalogenase; Gene; Biology; Enrichment culture; Metagenomics; Genome; Population; Vinyl chloride; Microbiology; Genetics; Chemistry; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001770054,0.0003519281,0.0003283541,0.0002831416,0.0002090588,0.0005565574,0.0002429621,0.000269684,0.0005407963],"category_scores_gemma":[0.0003234476,0.0002200243,0.0001785341,0.0003196171,0.000211119,0.0002134251,0.0003795736,0.0003812025,0.0002023298],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004352499,"about_ca_system_score_gemma":0.0002377785,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007536918,"about_ca_topic_score_gemma":0.008528502,"domain_scores_codex":[0.9995826,0.00003885211,0.0000372929,0.0001419396,0.00009971383,0.0000995317],"domain_scores_gemma":[0.9997186,0.00005905453,0.00006490766,0.00002811658,0.00006345307,0.00006585113],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005965906,0.00002807697,0.003480616,0.00001339404,0.000004292488,0.00001960475,0.00003448047,0.00003471212,0.9955357,0.00001163913,0.00001484937,0.0007628927],"study_design_scores_gemma":[0.00001713392,0.0007830324,0.1999207,0.00001526168,0.00003994377,0.0003064636,0.0005920729,0.0008617166,0.7963977,0.00003868043,0.001006701,0.00002064984],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9986351,0.0001815216,0.0003626779,0.0000215776,0.00000332384,0.00001514228,0.0003568446,0.00001687281,0.0004069032],"genre_scores_gemma":[0.9971289,0.0001548081,0.001004948,0.00003852825,0.000004095196,0.00002449159,0.0009045984,0.00001366823,0.0007259723],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007536918,"threshold_uncertainty_score":0.0149861,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02368511502854987,"score_gpt":0.2550923544688813,"score_spread":0.2314072394403315,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}