{"id":"W2744471774","doi":"10.1371/currents.outbreaks.309af53b9edcc785163539c30c3953f6","title":"Multi-provincial Salmonellosis Outbreak Related to Newly Hatched Chicks and Poults: A Genomics Perspective","year":2017,"lang":"en","type":"article","venue":"PLoS Currents","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Government of Alberta; Ministry of Health; Canadian Science Centre for Human and Animal Health; University of Alberta; Ministry of Agriculture; Public Health Agency of Canada; BC Centre for Disease Control","funders":"","keywords":"Outbreak; Pulsed-field gel electrophoresis; Typing; Salmonella; Serotype; Biology; Salmonella enterica; Cluster (spacecraft); Virology; Veterinary medicine; Genetics; Medicine; Genotype; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006504832,0.0002427567,0.0002374337,0.001181648,0.0004542261,0.001039974,0.0003700037,0.0004018731,0.001048202],"category_scores_gemma":[0.0006145498,0.0001076171,0.0002712309,0.001859282,0.0004342154,0.0004727459,0.0005840776,0.0005647414,0.0001215691],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002934243,"about_ca_system_score_gemma":0.002670062,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.07439546,"about_ca_topic_score_gemma":0.1128564,"domain_scores_codex":[0.9997701,0.0000382765,0.00000770612,0.00008061488,0.00003696363,0.0000663223],"domain_scores_gemma":[0.9993197,0.00009050892,0.0001914718,0.00002449543,0.0001935951,0.0001802563],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0004241143,0.0001421284,0.8196552,0.0008953681,0.0002633734,0.001908102,0.003735722,0.002424109,0.06029074,0.004815355,0.005107023,0.1003387],"study_design_scores_gemma":[0.000005659404,0.0001146818,0.9776007,0.0001512506,0.00007482781,0.000689916,0.00381774,0.001524105,0.001236975,0.001690877,0.01307441,0.0000188896],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9651851,0.007308594,0.005662669,0.00897521,0.00007283083,0.00004634754,0.003543289,0.00007259243,0.009133391],"genre_scores_gemma":[0.9832903,0.006057967,0.005967964,0.000869107,0.00007037733,0.00001822316,0.002645364,0.00002228249,0.00105839],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9256045,"threshold_uncertainty_score":0.1479249,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04751848196836145,"score_gpt":0.290437298003599,"score_spread":0.2429188160352376,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}