{"id":"W2745006471","doi":"10.1038/nbt.3893","title":"Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea","year":2017,"lang":"en","type":"article","venue":"Nature Biotechnology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2712,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Lawrence Berkeley National Laboratory; National Institute of Dental and Craniofacial Research; National Institute of Allergy and Infectious Diseases; Laboratory Directed Research and Development; National Human Genome Research Institute; Australian Research Council; National Institutes of Health; National Institute of Food and Agriculture; Russian Science Foundation; Joint Genome Institute; Argonne National Laboratory; U.S. Department of Energy; Gordon and Betty Moore Foundation; Biotechnology and Biological Sciences Research Council; Office of Science; Stiftelsen för Strategisk Forskning; U.S. Department of Agriculture; University of Chicago; National Science Foundation","keywords":"Metagenomics; Archaea; Genome; Bacteria; Biology; Computational biology; Genetics; Bacterial genome size; Bacterial genetics; Gene; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.01559926,0.001502795,0.001181389,0.01131904,0.001226145,0.00262263,0.003036155,0.002308127,0.007111261],"category_scores_gemma":[0.04863962,0.001002753,0.001059416,0.006690307,0.001395837,0.00382829,0.002515534,0.002229686,0.006078741],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001270032,"about_ca_system_score_gemma":0.003856974,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001688557,"about_ca_topic_score_gemma":0.002705049,"domain_scores_codex":[0.9844934,0.005232061,0.004208022,0.001040564,0.004598645,0.000427364],"domain_scores_gemma":[0.9407227,0.02030485,0.01090673,0.0137656,0.013276,0.001024121],"domain_codex":null,"domain_gemma":"reporting","domain_candidate":"reporting","domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.002944803,0.0004471025,0.02918822,0.01052945,0.00035196,0.000917477,0.002754139,0.008854677,0.1830605,0.1039471,0.1312668,0.5257378],"study_design_scores_gemma":[0.0001830629,0.0007984305,0.02807483,0.003466827,0.0003322257,0.001602887,0.001000194,0.008666017,0.1829206,0.05893078,0.7136788,0.0003452809],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.05611802,0.006177072,0.7634981,0.003256765,0.001468342,0.00138448,0.1154435,0.01382599,0.03882783],"genre_scores_gemma":[0.07096814,0.002357848,0.7965857,0.001858263,0.0003373499,0.002377511,0.1180935,0.001713602,0.005708086],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.9844007,"threshold_uncertainty_score":0.08249778,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007593637265745123,"score_gpt":0.2298840298229368,"score_spread":0.2222903925571916,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}