{"id":"W2747572201","doi":"10.12705/664.3","title":"A three‐genome five‐gene comprehensive phylogeny of the bulbous genus <i>Narcissus</i> (Amaryllidaceae) challenges current classifications and reveals multiple hybridization events","year":2017,"lang":"en","type":"article","venue":"Taxon","topic":"Chemical synthesis and alkaloids","field":"Chemistry","cited_by":33,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Biology; Monophyly; Phylogenetic tree; Genus; Ribosomal DNA; Evolutionary biology; Phylogenetics; Zoology; Botany; Genetics; Clade; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007808406,0.0001927711,0.0002782952,0.00001858275,0.0003815834,0.00003292404,0.0004995598,0.00009252233,0.0000629238],"category_scores_gemma":[0.0002328914,0.0001509407,0.0001135143,0.00003626725,0.0001832936,0.00006448685,0.0002682518,0.0001588551,0.000009944739],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004282371,"about_ca_system_score_gemma":0.00002406355,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000472077,"about_ca_topic_score_gemma":0.00003835228,"domain_scores_codex":[0.9988887,0.0000218023,0.0002780451,0.000355462,0.0002340497,0.0002219767],"domain_scores_gemma":[0.9982691,0.0001300199,0.0004491859,0.0009389213,0.000122757,0.00009002526],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000194838,0.0001483316,0.008462115,0.0002118347,0.00004327745,9.01799e-7,0.0001178778,0.000006607118,0.9627997,0.00007226719,0.000166444,0.02795112],"study_design_scores_gemma":[0.001151013,0.00002326169,0.4058401,0.0003086044,0.0001289033,0.00001344063,0.0001325074,0.0004703204,0.5185389,0.001424331,0.07149907,0.0004695826],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9900914,0.007778933,0.00006876561,0.0007233624,0.00009701588,0.0002205884,0.0002016771,0.00002770736,0.0007905871],"genre_scores_gemma":[0.9967614,0.002571815,0.000207664,0.00001693416,0.0001728051,0.00005030977,0.00002346059,0.00002304577,0.0001725362],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4442608,"threshold_uncertainty_score":0.6155185,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0488158479927376,"score_gpt":0.2594431779866614,"score_spread":0.2106273299939238,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}