{"id":"W2748450595","doi":"10.1038/s41598-017-08194-5","title":"Rapid amplification of four retrotransposon families promoted speciation and genome size expansion in the genus Panax","year":2017,"lang":"en","type":"article","venue":"Scientific Reports","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":38,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"Rural Development Administration","keywords":"Genome; Retrotransposon; Biology; Genome size; Ploidy; Subfamily; Genome evolution; Genetics; Ginseng; Panax notoginseng; Gene duplication; Transposable element; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001176578,0.0003032392,0.0001850764,0.0007476268,0.0002688425,0.0002697915,0.0001321144,0.0002528476,0.0007616476],"category_scores_gemma":[0.0001817498,0.0001769795,0.000262533,0.0004757958,0.0001802661,0.0003882474,0.0003120245,0.0003069326,0.0001542842],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002057295,"about_ca_system_score_gemma":0.0001105772,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007296083,"about_ca_topic_score_gemma":0.0009073045,"domain_scores_codex":[0.9998926,0.000009508697,0.000006958915,0.00006197132,0.00001707586,0.00001200977],"domain_scores_gemma":[0.9998958,0.00002276948,0.00003777453,0.00001259356,0.00001534425,0.00001562321],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001520266,0.00001142532,0.02043884,0.0001272102,0.00002312674,0.0001511132,0.0002091106,0.00009359374,0.9687707,0.0001022905,0.00002887104,0.009891792],"study_design_scores_gemma":[0.00001738549,0.0003458693,0.8968118,0.00002440412,0.0001028019,0.001794499,0.0004277535,0.001388304,0.09436935,0.0003371288,0.004360848,0.00001990847],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971368,0.0006268883,0.001067316,0.00001974055,0.00000331717,0.00001329572,0.0003870556,0.00005712318,0.0006885037],"genre_scores_gemma":[0.9960625,0.0003229178,0.001845418,0.00003027066,0.000004887408,0.00002458379,0.0008984134,0.00001813559,0.0007929975],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0007616476,"threshold_uncertainty_score":0.002547979,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03243702601191634,"score_gpt":0.2268885750975188,"score_spread":0.1944515490856025,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}