{"id":"W2748577514","doi":"10.1038/nbt.3947","title":"An integrated expression atlas of miRNAs and their promoters in human and mouse","year":2017,"lang":"en","type":"article","venue":"Nature Biotechnology","topic":"MicroRNA in disease regulation","field":"Biochemistry, Genetics and Molecular Biology","cited_by":606,"is_retracted":false,"has_abstract":false,"ca_institutions":"Child and Family Research Institute; University of British Columbia","funders":"RIKEN; Biotechnology and Biological Sciences Research Council; Novo Nordisk Fonden; Russian Science Foundation; Novo Nordisk; Ministry of Education, Culture, Sports, Science and Technology; National Cancer Institute; H. Lundbeck A/S; Lundbeckfonden; Conquer Cancer Foundation","keywords":"Promoter; microRNA; Atlas (anatomy); Biology; Computational biology; Gene expression; Genetics; Gene; Anatomy","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00007876497,0.0001031132,0.0001180281,0.00008183387,0.0000702606,0.00001472822,0.0002018835,0.0009820556,0.00000181611],"category_scores_gemma":[0.00007930379,0.00008173216,0.00001597058,0.00002589254,0.0002878734,0.000006249112,0.0001376636,0.0002209805,9.465543e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000007007718,"about_ca_system_score_gemma":0.00001380814,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002306662,"about_ca_topic_score_gemma":0.00009431221,"domain_scores_codex":[0.999456,0.00002652483,0.0001063366,0.0002772505,0.00002922933,0.0001046695],"domain_scores_gemma":[0.9993236,0.000002369947,0.0001110644,0.0005035027,0.00002932366,0.0000301179],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004021493,0.00003582769,0.00322078,0.00001588536,0.000007647851,0.000001264141,0.00002282537,4.898554e-7,0.9926125,0.0001527976,0.00004948466,0.003840277],"study_design_scores_gemma":[0.0003959006,0.0001529802,0.01666122,0.00002704391,0.00000284977,0.00000751303,0.00004509278,0.00003649491,0.9804901,0.0001828744,0.001913676,0.00008428218],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9983945,0.001034581,0.00008445925,0.0002688987,0.00002465804,0.0001418976,0.00001687282,0.00001391659,0.00002020095],"genre_scores_gemma":[0.9991918,0.0001003618,0.00058257,0.00001664618,0.00001751423,0.000004588581,0.00005541689,0.000010336,0.00002072253],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01344045,"threshold_uncertainty_score":0.7574512,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004883814505546584,"score_gpt":0.2591928271405895,"score_spread":0.2543090126350429,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}