{"id":"W2749081932","doi":"10.1038/hdy.2017.50","title":"Heritable gene expression differences between lake and stream stickleback include both parallel and antiparallel components","year":2017,"lang":"en","type":"article","venue":"Heredity","topic":"Genetic diversity and population structure","field":"Biochemistry, Genetics and Molecular Biology","cited_by":28,"is_retracted":false,"has_abstract":false,"ca_institutions":"McGill University","funders":"China Scholarship Council; Natural Sciences and Engineering Research Council of Canada; McGill University","keywords":"Stickleback; Biology; Gasterosteus; Parallel evolution; Natural selection; Gene; Evolutionary biology; Gene expression; Genetics; Transcriptome; Selection (genetic algorithm); Phylogenetics; Fish <Actinopterygii>","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000065286,0.0001298789,0.0001666388,0.00001199423,0.000454515,0.00009728916,0.000177247,0.0001531882,0.00003032343],"category_scores_gemma":[0.00002132731,0.0001164796,0.0000243999,0.000008688742,0.0001543659,0.00001098508,0.0003843631,0.00006150291,0.000001977162],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000001999622,"about_ca_system_score_gemma":0.00001137773,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009590877,"about_ca_topic_score_gemma":0.0002468503,"domain_scores_codex":[0.9993043,0.00003619793,0.0001054436,0.0002847775,0.0001112076,0.0001580608],"domain_scores_gemma":[0.999436,0.000008220832,0.0001016184,0.0003121174,0.00002672488,0.0001152814],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00004373695,0.00001987137,0.9445436,0.00002265982,0.00003091276,0.000002166604,0.00006943616,0.000007362439,0.05307613,0.000007562289,0.001442592,0.0007339884],"study_design_scores_gemma":[0.0006575735,0.00006794596,0.986261,0.00001452584,0.00002011693,0.000004410173,0.00005140826,0.00002115672,0.007010738,0.000249993,0.005492792,0.0001484177],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.998567,0.0002886557,0.0003053768,0.00007809923,0.0001277998,0.0001008503,0.0001582619,0.000007868726,0.0003660524],"genre_scores_gemma":[0.9960442,0.0002251663,0.002978086,0.0000292185,0.0002432552,0.000001916183,0.0001573468,0.000005860307,0.0003149463],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0460654,"threshold_uncertainty_score":0.4749899,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03574025895967208,"score_gpt":0.2632933905293723,"score_spread":0.2275531315697003,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}