{"id":"W2750304043","doi":"10.1038/sdata.2017.112","title":"FANTOM5 CAGE profiles of human and mouse samples","year":2017,"lang":"en","type":"article","venue":"Scientific Data","topic":"Immunotherapy and Immune Responses","field":"Immunology and Microbiology","cited_by":362,"is_retracted":false,"has_abstract":true,"ca_institutions":"Child and Family Research Institute; University of British Columbia","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; Diamantina Institute, University of Queensland; RIKEN; Tokyo Medical and Dental University; Biotechnology and Biological Sciences Research Council; Universitätsklinikum Regensburg; Deutsches Zentrum für Neurodegenerative Erkrankungen; Karolinska Institutet; Universiteit van Amsterdam; International Centre for Genetic Engineering and Biotechnology; University of Queensland; University of Cape Town; Ministry of Education, Culture, Sports, Science and Technology; South African Medical Research Council; Medical Research Council; University of Texas Health Science Center at Houston; Wellcome Trust; National Institute on Deafness and Other Communication Disorders; Child and Family Research Institute; National Cancer Institute; Eidgenössische Technische Hochschule Zürich; Melanoma Research Alliance","keywords":"Biology; Computational biology; Transcription (linguistics); Cage; Genome; Promoter; Gene; Pipeline (software); Workflow; Gene expression; Cell biology; Genetics; Computer science; Database","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["sts"],"consensus_categories":[],"category_scores_codex":[0.0008677685,0.00009885571,0.000184093,0.00008755303,0.00136187,0.0001907545,0.001581307,0.00008140565,0.0004051741],"category_scores_gemma":[0.0002762745,0.00008069646,0.00002508053,0.00003537716,0.001837314,0.0003985989,0.0009135972,0.0001007976,0.00008487485],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000004167295,"about_ca_system_score_gemma":0.00004937516,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003690922,"about_ca_topic_score_gemma":0.00008391684,"domain_scores_codex":[0.9990539,0.0000973687,0.0001990637,0.0003985531,0.00003719808,0.0002139208],"domain_scores_gemma":[0.9968587,0.00005538745,0.0001910799,0.002839446,0.00004500735,0.00001037493],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00005923555,0.00005129056,0.001706296,0.00001870064,0.00005496746,7.730594e-7,0.0002770536,1.216792e-8,0.9733546,0.0007245474,0.01641228,0.007340266],"study_design_scores_gemma":[0.0006681205,0.00006226732,0.03259525,0.0000374493,0.00001957261,0.00001245547,0.0002285719,0.000001358288,0.7778276,0.0001368141,0.1882828,0.0001278004],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9912811,0.003955258,0.00001842092,0.00009833983,0.0007884635,0.0001494361,0.003118836,0.00002536953,0.0005647884],"genre_scores_gemma":[0.9661128,0.00007619117,0.0001040605,0.00001032887,0.000009507888,0.000003316096,0.00194655,0.000008799429,0.03172846],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.195527,"threshold_uncertainty_score":0.9999382,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.08039608286432703,"score_gpt":0.3263989378373338,"score_spread":0.2460028549730068,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}