{"id":"W2750876524","doi":"10.1016/j.humpath.2017.08.036","title":"Characterization of genome-wide copy number aberrations in colonic mixed adenoneuroendocrine carcinoma and neuroendocrine carcinoma reveals recurrent amplification of PTGER4 and MYC genes","year":2017,"lang":"en","type":"article","venue":"Human Pathology","topic":"Neuroendocrine Tumor Research Advances","field":"Medicine","cited_by":21,"is_retracted":false,"has_abstract":false,"ca_institutions":"Dalhousie University","funders":"","keywords":"Adenocarcinoma; Cancer research; Copy-number variation; Carcinoma; Biology; Gene duplication; Comparative genomic hybridization; Gene; Genome; Cancer; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001203075,0.0002233333,0.0006400817,0.0002909799,0.0001910723,0.00002534677,0.0001984556,0.00001534711,0.00005639575],"category_scores_gemma":[0.0003844078,0.000228102,0.00005014376,0.0001192253,0.0005935184,0.0002016326,0.0002346859,0.0002567132,0.000004908543],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003362078,"about_ca_system_score_gemma":0.00005801228,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00006329593,"about_ca_topic_score_gemma":0.0001024781,"domain_scores_codex":[0.9979193,0.0002446551,0.0006881034,0.0005353731,0.0002208108,0.0003917892],"domain_scores_gemma":[0.9982198,0.0001128484,0.0005507811,0.0007564094,0.0002142828,0.0001458025],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001561775,0.0001296365,0.5654564,0.0002495865,0.000006437124,0.00106382,0.00008660498,3.858125e-7,0.4322278,0.0003389531,0.00002399433,0.0002601703],"study_design_scores_gemma":[0.001945079,0.0007830772,0.9469464,0.00004545994,0.00004605348,0.002540003,0.00003556758,0.00002466856,0.04698794,0.0002313804,0.000292699,0.0001216205],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9970276,0.0003628003,0.00001502456,0.001295205,0.0001095812,0.0009084779,0.00006549355,0.00001975885,0.0001960431],"genre_scores_gemma":[0.9983107,0.000768529,0.0001888625,0.00006608909,0.00006229376,0.0001000915,0.0001287906,0.00003635921,0.0003382557],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.3852399,"threshold_uncertainty_score":0.9301728,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03946605358323484,"score_gpt":0.3339203444901513,"score_spread":0.2944542909069164,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}