{"id":"W2750927418","doi":"10.1145/3107411.3108186","title":"The Fate of Retrotransposed Processed Genes in <i>Arabidopsis Thaliana</i>","year":2017,"lang":"en","type":"article","venue":"","topic":"Plant Gene Expression Analysis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa","funders":"","keywords":"Gene; Arabidopsis thaliana; Biology; Genetics; Brassicaceae; Arabidopsis; Gene expression; Computational biology; Botany","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002101303,0.00008735876,0.000120485,0.00002269394,0.0001570326,0.00004372186,0.0005440633,0.00007927946,0.00001535969],"category_scores_gemma":[0.00009847146,0.00005570253,0.00007681713,0.00004169957,0.00009762061,0.000004211633,0.00006645385,0.00004205652,0.000003930021],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000002971783,"about_ca_system_score_gemma":0.00003988446,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001006749,"about_ca_topic_score_gemma":0.001007168,"domain_scores_codex":[0.9993194,0.00003425084,0.0001853338,0.0001953968,0.0001138314,0.0001517575],"domain_scores_gemma":[0.9991046,0.00001028432,0.0001383346,0.0006545042,0.00005792044,0.00003438134],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00006718543,0.00001889354,0.01623075,0.000009181195,0.00003209227,0.000001813189,0.00001193598,0.00002085908,0.97951,0.0000252095,0.002499723,0.001572322],"study_design_scores_gemma":[0.000312293,0.00002691918,0.007395568,0.00001117099,0.00001126737,0.000001201398,0.00005161131,0.00009926303,0.972794,0.00003559105,0.0191768,0.00008433395],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9867173,0.0003870159,0.000228341,0.0006500133,0.00005299959,0.0001053432,0.0000143604,0.000004982204,0.0118396],"genre_scores_gemma":[0.9951001,0.0007660296,0.0002028154,0.0000729937,0.00003133202,0.00001148201,0.00001947406,0.000007731883,0.003788081],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01667708,"threshold_uncertainty_score":0.2271483,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01225234632429163,"score_gpt":0.263154118018271,"score_spread":0.2509017716939794,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}