{"id":"W2751447020","doi":"10.3390/v9090253","title":"Re-Assembly and Analysis of an Ancient Variola Virus Genome","year":2017,"lang":"en","type":"article","venue":"Viruses","topic":"Poxvirus research and outbreaks","field":"Immunology and Microbiology","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Victoria","funders":"Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada","keywords":"Genome; Biology; Variola virus; Vaccinia; Genetics; Cowpox virus; Virus; Orthopoxvirus; Lineage (genetic); Virology; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003308139,0.0001152936,0.0003305006,0.0002630762,0.0003981394,0.00005630229,0.0004148757,0.0001337014,0.000422122],"category_scores_gemma":[0.0001798165,0.00009516538,0.00008264435,0.0001196994,0.0003673274,0.000239705,0.0002017804,0.0001361711,0.0001132581],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001455163,"about_ca_system_score_gemma":0.00004831954,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002899863,"about_ca_topic_score_gemma":0.002290594,"domain_scores_codex":[0.9990552,0.000112821,0.0001919629,0.0002720676,0.0000483333,0.0003196329],"domain_scores_gemma":[0.9989256,0.00007555761,0.0001518386,0.0007296414,0.00005971472,0.00005760936],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001533812,0.0001087786,0.01582612,0.000006652689,0.000864527,0.000009084803,0.0002679041,0.000004204866,0.97653,0.0002674166,0.0001644164,0.005797474],"study_design_scores_gemma":[0.0005540111,0.0002257082,0.7073818,0.000005466116,0.0002733365,0.000003403201,0.00007214515,0.00003310496,0.2524259,0.00007301891,0.03880201,0.0001500996],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9948353,0.002678824,0.00004796555,0.00003323565,0.00009953121,0.0000839203,0.0003401551,0.00002373109,0.001857366],"genre_scores_gemma":[0.9989521,0.0003315571,0.0000678096,0.0002459561,0.00001456406,0.000006676332,0.00005036149,0.000008229936,0.0003227509],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7241042,"threshold_uncertainty_score":0.462194,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04108956471401942,"score_gpt":0.3226906471109221,"score_spread":0.2816010823969027,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}