{"id":"W2751591718","doi":"10.1038/emi.2017.66","title":"Surveillance for highly pathogenic influenza A viruses in California during 2014–2015 provides insights into viral evolutionary pathways and the spatiotemporal extent of viruses in the Pacific Americas Flyway","year":2017,"lang":"en","type":"article","venue":"Emerging Microbes & Infections","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":26,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Flyway; Biology; Waterfowl; Anas; Clade; Influenza A virus subtype H5N1; Influenza A virus; Phylogenetic tree; Reassortment; Phylogenetics; Virology; Pandemic; Anseriformes; Genetics; Gene; Virus; Zoology; Ecology; Coronavirus disease 2019 (COVID-19)","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004039704,0.0002250633,0.0001604069,0.0009341443,0.0005110104,0.0004825806,0.0002563291,0.000143105,0.0004397352],"category_scores_gemma":[0.0005719177,0.0001709226,0.0002062924,0.0006289267,0.0002231158,0.0002445469,0.0003220921,0.0002217356,0.00006479431],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007698778,"about_ca_system_score_gemma":0.0007624581,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.1450282,"about_ca_topic_score_gemma":0.2804473,"domain_scores_codex":[0.9997132,0.00002623858,0.000021701,0.0001318024,0.00005420851,0.00005279238],"domain_scores_gemma":[0.9992082,0.00008074303,0.0003980671,0.0000419601,0.0001721255,0.00009900676],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00004206669,0.00001896053,0.9948204,0.00001601249,0.00002524518,0.00003273412,0.0001935887,0.0001666466,0.001941476,0.00001969948,0.0001476792,0.002575563],"study_design_scores_gemma":[0.000001490891,0.00002908556,0.9990133,0.000008920246,0.0000141486,0.00002834175,0.0001988799,0.0002181708,0.000238213,0.000005493414,0.0002419936,0.000001919436],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988139,0.00006881349,0.00007416072,0.000008493098,0.000001885221,0.000006139371,0.0005212427,0.000004386088,0.0005009676],"genre_scores_gemma":[0.9979873,0.0000980203,0.0004087848,0.00001009175,0.000003851432,0.000008887314,0.001312036,0.00000171014,0.0001694605],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1450282,"threshold_uncertainty_score":0.288368,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04603967594656178,"score_gpt":0.3495260389520849,"score_spread":0.3034863630055231,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}