{"id":"W2751591718","doi":"10.1038/emi.2017.66","title":"Surveillance for highly pathogenic influenza A viruses in California during 2014–2015 provides insights into viral evolutionary pathways and the spatiotemporal extent of viruses in the Pacific Americas Flyway","year":2017,"lang":"en","type":"article","venue":"Emerging Microbes & Infections","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":26,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases","keywords":"Flyway; Biology; Waterfowl; Anas; Clade; Influenza A virus subtype H5N1; Influenza A virus; Phylogenetic tree; Reassortment; Phylogenetics; Virology; Pandemic; Anseriformes; Genetics; Gene; Virus; Zoology; Ecology; Coronavirus disease 2019 (COVID-19)","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000970108,0.0002902297,0.0005416525,0.0003958185,0.001242519,0.00009432387,0.000293323,0.00009261965,0.000009231502],"category_scores_gemma":[0.001515766,0.0001838811,0.0001831807,0.0002869202,0.001117694,0.000313935,0.0002686461,0.0004129243,0.00001496102],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001998733,"about_ca_system_score_gemma":0.0001985751,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0068186,"about_ca_topic_score_gemma":0.005181773,"domain_scores_codex":[0.9977788,0.000356258,0.0006938396,0.0004091851,0.0003067168,0.0004552323],"domain_scores_gemma":[0.9980289,0.0005581002,0.0003717903,0.0007260895,0.0002524121,0.00006274135],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001248679,0.0005202031,0.8640873,0.0004769721,0.0002082886,0.00002350692,0.01128229,0.0002889599,0.1188248,0.0006383972,0.001189909,0.001210689],"study_design_scores_gemma":[0.00649466,0.000372567,0.9453061,0.0004049273,0.00007576159,0.00004252753,0.001913274,0.0005492382,0.00516903,0.001178498,0.03812038,0.0003730926],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9893132,0.007600095,0.00008781307,0.0009475033,0.0001413394,0.00162831,0.0001000996,0.00004438731,0.0001372845],"genre_scores_gemma":[0.9974279,0.001205517,0.0002834687,0.0002661984,0.000136908,0.0006192628,0.000009536606,0.00003202688,0.0000192244],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1136558,"threshold_uncertainty_score":0.9997951,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04603967594656178,"score_gpt":0.3495260389520849,"score_spread":0.3034863630055231,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}