{"id":"W2752326209","doi":"10.1080/15548627.2015.1100356","title":"Guidelines for the use and interpretation of assays for monitoring autophagy (3rd edition)","year":2016,"lang":"en","type":"article","venue":"Autophagy","topic":"Autophagy in Disease and Therapy","field":"Medicine","cited_by":5992,"is_retracted":false,"has_abstract":true,"ca_institutions":"Libin Cardiovascular Institute of Alberta; Sunnybrook Hospital; University of Calgary; Concordia University; University of Waterloo; Canada's Michael Smith Genome Sciences Centre; Terry Fox Research Institute; Institute for Research in Immunology and Cancer; Manitoba Health; York University; Innovation and Economic Development Trois Rivières; BC Cancer Agency; University Health Network; University of Alberta; University of British Columbia; CancerCare Manitoba; University of Manitoba; Prevention of Organ Failure; Université Laval; Centre hospitalier universitaire de Québec; Jewish General Hospital; Simon Fraser University; Dalhousie University; University of Ottawa; McGill University; Université du Québec à Trois-Rivières; McGill University Health Centre; Lunenfeld-Tanenbaum Research Institute; St. Paul's Hospital; Western University; Hospital for Sick Children; Royal Military College of Canada; Université de Montréal; Montreal Neurological Institute and Hospital; Université de Sherbrooke; Université du Québec à Montréal; McMaster University; University of Toronto; Sunnybrook Health Science Centre; Institute of Infection and Immunity","funders":"Eunice Kennedy Shriver National Institute of Child Health and Human Development; National Institute on Minority Health and Health Disparities; National Institute of Environmental Health Sciences; National Institute of Arthritis and Musculoskeletal and Skin Diseases; National Institute of Diabetes and Digestive and Kidney Diseases; National Institute on Drug Abuse; National Heart, Lung, and Blood Institute; National Institute on Alcohol Abuse and Alcoholism; National Eye Institute; National Center for Complementary and Integrative Health; National Institute for Health and Care Research; National Institute on Aging; National Cancer Institute; Wellcome Trust; Cancer Research UK; Biotechnology and Biological Sciences Research Council; National Center for Research Resources; National Institute of Allergy and Infectious Diseases; Medical Research Council; Brain Tumour Charity; National Institutes of Health; U.S. Department of Veterans Affairs; Schweizerischer Nationalfonds zur Förderung der Wissenschaftlichen Forschung; Novo Nordisk Fonden; Doris Duke Charitable Foundation; National Institute of Neurological Disorders and Stroke; National Centre for the Replacement, Refinement and Reduction of Animals in Research; Parkinson's UK; Lundbeckfonden; Action Medical Research; National Institute of General Medical Sciences","keywords":"Autophagy; Autophagosome; Biology; Cell biology; Vacuole; Phagosome; ATG8; Multicellular organism; Biogenesis; Intracellular; Cell; Biochemistry; Cytoplasm","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.01687655,0.003175883,0.003630068,0.009215803,0.001643423,0.006361553,0.007318194,0.005714137,0.1020033],"category_scores_gemma":[0.0236567,0.003339704,0.003166059,0.004545799,0.001589628,0.002392248,0.003302586,0.005672941,0.1709214],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002075978,"about_ca_system_score_gemma":0.007049762,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005907254,"about_ca_topic_score_gemma":0.009006382,"domain_scores_codex":[0.9862894,0.003880573,0.002933678,0.001285465,0.004824319,0.0007865344],"domain_scores_gemma":[0.9810863,0.004047528,0.001634763,0.003092729,0.009430466,0.0007080604],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0004006982,0.0002735449,0.0008481319,0.002167986,0.00005894216,0.000337218,0.0002275258,0.0002963945,0.01052974,0.002192676,0.8004493,0.182218],"study_design_scores_gemma":[0.0001353921,0.0002038,0.003626222,0.001737023,0.00004915048,0.001053066,0.0001398442,0.0003993848,0.004554511,0.00247653,0.9855465,0.00007865144],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.007281895,0.1661323,0.3502355,0.03245463,0.05828259,0.01780749,0.1133928,0.06159114,0.1928216],"genre_scores_gemma":[0.01213761,0.08745861,0.4545408,0.0178539,0.00630892,0.03282503,0.1033402,0.007728247,0.2778065],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.1020033,"threshold_uncertainty_score":0.341235,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.1111720690173936,"score_gpt":0.3736674081243194,"score_spread":0.2624953391069259,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). 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